RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 LCN2P80188 198 aa9.35□□□□□ -0.91
PTPRF-204ENST00000412568 ZNF497Q6ZNH5 498 aa9.35□□□□□ -0.91
PTPRF-204ENST00000412568 RAB24Q969Q5 203 aa9.35□□□□□ -0.91
PTPRF-204ENST00000412568 CHODLQ9H9P2 273 aa9.35□□□□□ -0.91
PTPRF-204ENST00000412568 GOLT1BQ9Y3E0 138 aa9.35□□□□□ -0.91
PTPRF-204ENST00000412568 ZNF729A6NN14 1252 aaPredicted RBP9.34□□□□□ -0.91
PTPRF-204ENST00000412568 RPLP1P05386 114 aaKnown RBP9.34□□□□□ -0.91
PTPRF-204ENST00000412568 TRGC1P0CF51 173 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 SLC35B1P78383 322 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 ZFYVE26Q68DK2 2539 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 FAM222BQ8WU58 562 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 SMDT1Q9H4I9 107 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 MANBALQ9NQG1 85 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 DCAF16Q9NXF7 216 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 TMEM56-RWDD3S4R434 201 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 KBTBD11-OT1A0A1B0GTJ5 212 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 BRS3P32247 399 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 TIMP3P35625 211 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 RND2P52198 227 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 ATP5J2P56134 94 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 FAM162BQ5T6X4 162 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 FOXL2NBQ6ZUU3 175 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 LINC00469Q8N7U9 141 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 RASL11BQ9BPW5 248 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 WFDC1Q9HC57 220 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 TLN2Q9Y4G6 2542 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 TRIOO75962 3097 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 CEACAM18A8MTB9 384 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 FGF16O43320 207 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 DKK1O94907 266 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 RNF224P0DH78 156 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 MEF2BQ02080 365 aaPredicted RBP9.34□□□□□ -0.91
PTPRF-204ENST00000412568 PIP4P1Q86T03 277 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 CBLN4Q9NTU7 201 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 DMRT1Q9Y5R6 373 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 J3QR89 54 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 KBTBD11O94819 623 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 FA2HQ7L5A8 372 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 OR9G1Q8NH87 305 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 ANAPC16Q96DE5 110 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 WASHC3Q9Y3C0 194 aa9.34□□□□□ -0.91
PTPRF-204ENST00000412568 J3KRW8 73 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 GATA2P23769 480 aaPredicted RBP9.33□□□□□ -0.92
PTPRF-204ENST00000412568 HTR1DP28221 377 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 NUBP1P53384 320 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 DNM1P46Q6ZS02 220 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 RNASE6Q93091 150 aaKnown RBP9.33□□□□□ -0.92
PTPRF-204ENST00000412568 HSPB9Q9BQS6 159 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 CLEC5AQ9NY25 188 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 MYO9AB2RTY4 2548 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 DENND4AQ7Z401 1863 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 LINC00869P0C866 280 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 CD177Q8N6Q3 437 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 RCC1LQ96I51 464 aaKnown RBP9.33□□□□□ -0.92
PTPRF-204ENST00000412568 CHRDL1Q9BU40 450 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 RNF24Q9Y225 148 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 CARHSP1Q9Y2V2 147 aaKnown RBP9.33□□□□□ -0.92
PTPRF-204ENST00000412568 IGHV3OR16-8A0A075B7F1 116 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 FAM90A26D6RGX4 464 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 M0QZK8 103 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 GGCTO75223 188 aaKnown RBP9.33□□□□□ -0.92
PTPRF-204ENST00000412568 NDUFB4O95168 129 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 NHLH1Q02575 133 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 RPEL1Q2QD12 228 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 ZNF600Q6ZNG1 722 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 MRPL20Q9BYC9 149 aaKnown RBP9.33□□□□□ -0.92
PTPRF-204ENST00000412568 FBXL15Q9H469 300 aa9.33□□□□□ -0.92
PTPRF-204ENST00000412568 TECRQ9NZ01 308 aaKnown RBP9.33□□□□□ -0.92
PTPRF-204ENST00000412568 LOC105371242A0A075B767 164 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 MBD3L4A6NDZ8 208 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-204ENST00000412568 MBD3L3A6NE82 208 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-204ENST00000412568 DPRXA6NFQ7 191 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 MBD3L5A6NJ08 208 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-204ENST00000412568 CD81P60033 236 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 ARL16Q0P5N6 197 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 LY6EQ16553 131 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 ZNF324BQ6AW86 544 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-204ENST00000412568 CLEC2AQ6UVW9 174 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 OR8I2Q8N0Y5 310 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 MBD3L2Q8NHZ7 208 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-204ENST00000412568 THYN1Q9P016 225 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 M0R2Z0 102 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 NAPSAO96009 420 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 RPL24P83731 157 aaKnown RBP9.32□□□□□ -0.92
PTPRF-204ENST00000412568 MORN2Q502X0 79 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 NPIPB3Q92617 1050 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 VKORC1Q9BQB6 163 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 SAA2-SAA4A0A096LPE2 208 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 SRRM5B3KS81 715 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 NDUFA2O43678 99 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 SAA2P0DJI9 122 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-204ENST00000412568 PRB4P10163 310 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-204ENST00000412568 LGALS7P47929 136 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 RPL30P62888 115 aaKnown RBP9.32□□□□□ -0.92
PTPRF-204ENST00000412568 ID3Q02535 119 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 TFF3Q07654 80 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 OR4F17Q8NGA8 305 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 OR4C13Q8NGP0 309 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 OR1L6Q8NGR2 347 aa9.32□□□□□ -0.92
PTPRF-204ENST00000412568 OR1P1Q8NH06 330 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms