RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 UBE2G2P60604 165 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 PRCDQ00LT1 54 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 PMCHL1Q16048 86 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 HLA-DRB5Q30154 266 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 ALKBH6Q3KRA9 238 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 FAM162BQ5T6X4 162 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 VWA1Q6PCB0 445 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 TCF23Q7RTU1 214 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 ATP5L2Q7Z4Y8 100 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 LRP11Q86VZ4 500 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 KLHDC1Q8N7A1 406 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 SIGLECL1Q8N7X8 197 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 TMEM178AQ8NBL3 297 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 PLPPR2Q96GM1 343 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 HSPB9Q9BQS6 159 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 HES7Q9BYE0 225 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 LPAR2Q9HBW0 351 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 UQCR10Q9UDW1 63 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 CBY1Q9Y3M2 126 aa4.71□□□□□ -1.65
CCDC88A-203ENST00000412148 DOCK7Q96N67 2140 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 RAI1Q7Z5J4 1906 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF705FA8MVS1 300 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 C22orf46C9J442 243 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 FCN1O00602 326 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 TM4SF5O14894 197 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF705DP0CH99 300 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF705BP0CI00 300 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 IRF2P14316 349 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 GNG4P50150 75 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 MRPS11P82912 194 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 PAX2Q02962 417 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 FAM71F2Q6NXP2 309 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 OR4P4Q8NGL7 312 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 ORAOV1Q8WV07 137 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 GNB4Q9HAV0 340 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 SEPSECSQ9HD40 501 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 PLSCR4Q9NRQ2 329 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 BET1LQ9NYM9 111 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 TBL2Q9Y4P3 447 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 SOX21Q9Y651 276 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 IGKV1D-17A0A075B6S4 117 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 SNURFLB1AK76 121 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 AQP7O14520 342 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 WNT9BO14905 357 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF324O75467 553 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 RBMXL2O75526 392 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 CEBPDP49716 269 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 RPS20P60866 119 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 MAJINQ3KP22 176 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 TIGITQ495A1 244 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 PVRIGQ6DKI7 326 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 FAM180AQ6UWF9 173 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 IGFL2Q6UWQ7 119 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 WFIKKN1Q96NZ8 548 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 IDI2-AS1Q9NZ38 188 aa4.71□□□□□ -1.66
CCDC88A-203ENST00000412148 CACNA1GO43497 2377 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 A0A1W2PS18 150 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 PGPEP1LA6NFU8 196 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 M0R1X1 148 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 CRXO43186 299 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 TOMM40O96008 361 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 IGHV3-13P01766 116 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 IGLC2P0DOY2 106 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 IGLC3P0DOY3 106 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF25P17030 456 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 EGR1P18146 543 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 REG1BP48304 166 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 SELENOVP59797 346 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 CENPWQ5EE01 88 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 OR4A47Q6IF82 309 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 BAGE3Q86Y29 109 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 BAGE2Q86Y30 109 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 C8orf31Q8N9H6 132 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 ST6GALNAC3Q8NDV1 305 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 OR4A5Q8NH83 315 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 MAFAQ8NHW3 353 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF503Q96F45 646 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 NRN1Q9NPD7 142 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 FBXL7Q9UJT9 491 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 XIRP2A4UGR9 3374 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 KBTBD11-OT1A0A1B0GTJ5 212 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 GRIFINA4D1Z8 144 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 BMPR1BO00238 502 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 UPK2O00526 184 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 DEFA4P12838 97 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 CDKN1AP38936 164 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 TBR1Q16650 682 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 CLEC12BQ2HXU8 276 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 C17orf58Q2M2W7 97 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 CT83Q5H943 113 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 NIT1Q86X76 327 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 ABHD12Q8N2K0 398 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 OR2D3Q8NGH3 330 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 UBALD1Q8TB05 177 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 LRRC29Q8WV35 223 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 OR2V2Q96R30 315 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 NABP2Q9BQ15 211 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 SLC25A33Q9BSK2 321 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 ENY2Q9NPA8 101 aa4.7□□□□□ -1.66
CCDC88A-203ENST00000412148 CALYQ9NYX4 217 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms