RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CADM3Q8N126 398 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 LHFPL5Q8TAF8 219 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 GLYATL2Q8WU03 294 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 DPF1Q92782 380 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 RCC1LQ96I51 464 aaKnown RBP10.32□□□□□ -0.76
VPS28-202ENST00000377348 TMEM222Q9H0R3 208 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 TMEM14BQ9NUH8 114 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 PRNDQ9UKY0 176 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 ZNF257Q9Y2Q1 563 aa10.32□□□□□ -0.76
VPS28-202ENST00000377348 TRBV9A0A0B4J1U6 114 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 A0A0G2JLM5 398 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 ANKRD34BA5PLL1 514 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 LINC01619G3V211 115 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 TRBV12-3P01733 135 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 CRYGCP07315 174 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 FGF2P09038 288 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 P0C879 139 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 TRAPPC2P0DI81 140 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 TRAPPC2BP0DI82 140 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 AKR1C4P17516 323 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 CCR6P51684 374 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 DEFA6Q01524 100 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 WT1-ASQ06250 92 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 BEAN1Q3B7T3 259 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 TMED4Q7Z7H5 227 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 SGPP2Q8IWX5 399 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 OR1L8Q8NGR8 309 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 OR4A16Q8NH70 328 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 SCGB3A2Q96PL1 93 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 FANCD2OSQ96PS1 177 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 TSC22D3Q99576 134 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 NDUFA4L2Q9NRX3 87 aa10.31□□□□□ -0.76
VPS28-202ENST00000377348 A0A0B4J293 547 aa10.3□□□□□ -0.76
VPS28-202ENST00000377348 B3GALNT1O75752 331 aa10.3□□□□□ -0.76
VPS28-202ENST00000377348 CDS2O95674 445 aa10.3□□□□□ -0.76
VPS28-202ENST00000377348 PRB2P02812 416 aaPredicted RBP10.3□□□□□ -0.76
VPS28-202ENST00000377348 HSPB1P04792 205 aaKnown RBP10.3□□□□□ -0.76
VPS28-202ENST00000377348 OR8U8P0C7N1 319 aa10.3□□□□□ -0.76
VPS28-202ENST00000377348 OR13C7P0DN81 318 aa10.3□□□□□ -0.76
VPS28-202ENST00000377348 SUPT4H1P63272 117 aaKnown RBP10.3□□□□□ -0.76
VPS28-202ENST00000377348 ATP5G2Q06055 141 aa10.3□□□□□ -0.76
VPS28-202ENST00000377348 SPINK9Q5DT21 86 aa10.3□□□□□ -0.76
VPS28-202ENST00000377348 SELENOHQ8IZQ5 122 aaKnown RBP10.3□□□□□ -0.76
VPS28-202ENST00000377348 DEDD2Q8WXF8 326 aa10.3□□□□□ -0.76
VPS28-202ENST00000377348 DCUN1D4Q92564 292 aa10.3□□□□□ -0.76
VPS28-202ENST00000377348 USMG5Q96IX5 58 aa10.3□□□□□ -0.76
VPS28-202ENST00000377348 FBXL7Q9UJT9 491 aa10.3□□□□□ -0.76
VPS28-202ENST00000377348 DMRT1Q9Y5R6 373 aa10.3□□□□□ -0.76
VPS28-202ENST00000377348 S4R3C0 116 aa10.3□□□□□ -0.76
VPS28-202ENST00000377348 FAM223BA6NKX1 122 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 NDUFB8O95169 186 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 IGHV3-23P01764 117 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 DEFA4P12838 97 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 HOXD3P31249 432 aaPredicted RBP10.29□□□□□ -0.76
VPS28-202ENST00000377348 MECP2P51608 486 aaKnown RBP10.29□□□□□ -0.76
VPS28-202ENST00000377348 DHODHQ02127 395 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 EXOSC2Q13868 293 aaKnown RBP10.29□□□□□ -0.76
VPS28-202ENST00000377348 TMEM187Q14656 261 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 C15orf32Q32M92 178 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 TMEM268Q5VZI3 342 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 ZNF343Q6P1L6 599 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 FAM223AQ8IWN6 122 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 NECAP1Q8NC96 275 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 OR5B3Q8NH48 314 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 RNASE11Q8TAA1 199 aaKnown RBP10.29□□□□□ -0.76
VPS28-202ENST00000377348 DLX4Q92988 240 aaPredicted RBP10.29□□□□□ -0.76
VPS28-202ENST00000377348 RBPMSQ93062 196 aaKnown RBP10.29□□□□□ -0.76
VPS28-202ENST00000377348 LSM10Q969L4 123 aaKnown RBP10.29□□□□□ -0.76
VPS28-202ENST00000377348 RRNAD1Q96FB5 475 aaKnown RBP10.29□□□□□ -0.76
VPS28-202ENST00000377348 SRSF8Q9BRL6 282 aaKnown RBP10.29□□□□□ -0.76
VPS28-202ENST00000377348 FKBP11Q9NYL4 201 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 PTTG2Q9NZH5 202 aa10.29□□□□□ -0.76
VPS28-202ENST00000377348 PRKDCP78527 4128 aaKnown RBP10.29□□□□□ -0.76
VPS28-202ENST00000377348 IGLV11-55A0A075B6I3 123 aa10.28□□□□□ -0.76
VPS28-202ENST00000377348 NAP1L6A6NFF2 107 aa10.28□□□□□ -0.76
VPS28-202ENST00000377348 ATG12O94817 140 aa10.28□□□□□ -0.76
VPS28-202ENST00000377348 DHFRP00374 187 aa10.28□□□□□ -0.76
VPS28-202ENST00000377348 BTCP35070 178 aa10.28□□□□□ -0.76
VPS28-202ENST00000377348 HSPE1P61604 102 aaKnown RBP10.28□□□□□ -0.76
VPS28-202ENST00000377348 KPRPQ5T749 579 aaPredicted RBP10.28□□□□□ -0.76
VPS28-202ENST00000377348 THOC7Q6I9Y2 204 aaKnown RBP10.28□□□□□ -0.76
VPS28-202ENST00000377348 Q6ZRM9 215 aa10.28□□□□□ -0.76
VPS28-202ENST00000377348 GALNT14Q96FL9 552 aa10.28□□□□□ -0.76
VPS28-202ENST00000377348 TMEM56Q96MV1 263 aa10.28□□□□□ -0.76
VPS28-202ENST00000377348 SLC25A21Q9BQT8 299 aaPredicted RBP10.28□□□□□ -0.76
VPS28-202ENST00000377348 RANGRFQ9HD47 186 aaPredicted RBP10.28□□□□□ -0.76
VPS28-202ENST00000377348 PEF1Q9UBV8 284 aaKnown RBP10.28□□□□□ -0.76
VPS28-202ENST00000377348 FLVCR2Q9UPI3 526 aa10.28□□□□□ -0.76
VPS28-202ENST00000377348 KCNIP3Q9Y2W7 256 aa10.28□□□□□ -0.76
VPS28-202ENST00000377348 TMEM56-RWDD3S4R434 201 aa10.28□□□□□ -0.76
VPS28-202ENST00000377348 MFSD2BA6NFX1 497 aa10.27□□□□□ -0.77
VPS28-202ENST00000377348 SEC14L6B5MCN3 397 aa10.27□□□□□ -0.77
VPS28-202ENST00000377348 OVOL1O14753 267 aa10.27□□□□□ -0.77
VPS28-202ENST00000377348 PLA2G10O15496 165 aa10.27□□□□□ -0.77
VPS28-202ENST00000377348 ST8SIA3O43173 380 aa10.27□□□□□ -0.77
VPS28-202ENST00000377348 DUS4LO95620 317 aaKnown RBP10.27□□□□□ -0.77
VPS28-202ENST00000377348 MFAP2P55001 183 aa10.27□□□□□ -0.77
VPS28-202ENST00000377348 PRCDQ00LT1 54 aa10.27□□□□□ -0.77
VPS28-202ENST00000377348 RBMS2Q15434 407 aaKnown RBP10.27□□□□□ -0.77
VPS28-202ENST00000377348 KLK9Q2XQG4 91 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms