RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 DUX3Q96PT4 197 aa11.54□□□□□ -0.56
COL9A1-204ENST00000370496 SRSF8Q9BRL6 282 aaKnown RBP11.54□□□□□ -0.56
COL9A1-204ENST00000370496 PDCD10Q9BUL8 212 aa11.54□□□□□ -0.56
COL9A1-204ENST00000370496 TMEM14BQ9NUH8 114 aa11.54□□□□□ -0.56
COL9A1-204ENST00000370496 PRR13Q9NZ81 148 aa11.54□□□□□ -0.56
COL9A1-204ENST00000370496 WNK1Q9H4A3 2382 aa11.53□□□□□ -0.56
COL9A1-204ENST00000370496 TEX50A0A1B0GTY4 177 aa11.53□□□□□ -0.56
COL9A1-204ENST00000370496 CGB1A6NKQ9 187 aa11.53□□□□□ -0.56
COL9A1-204ENST00000370496 PRH1P02810 166 aa11.53□□□□□ -0.56
COL9A1-204ENST00000370496 LGALS1P09382 135 aaKnown RBP11.53□□□□□ -0.56
COL9A1-204ENST00000370496 DEFA4P12838 97 aa11.53□□□□□ -0.56
COL9A1-204ENST00000370496 PSMB6P28072 239 aa11.53□□□□□ -0.56
COL9A1-204ENST00000370496 RAB25P57735 213 aa11.53□□□□□ -0.56
COL9A1-204ENST00000370496 SUPT4H1P63272 117 aaKnown RBP11.53□□□□□ -0.56
COL9A1-204ENST00000370496 TMEM187Q14656 261 aa11.53□□□□□ -0.56
COL9A1-204ENST00000370496 IZUMO4Q1ZYL8 232 aa11.53□□□□□ -0.56
COL9A1-204ENST00000370496 ETV3LQ6ZN32 361 aa11.53□□□□□ -0.56
COL9A1-204ENST00000370496 HSD17B13Q7Z5P4 300 aaPredicted RBP11.53□□□□□ -0.56
COL9A1-204ENST00000370496 FAM219AQ8IW50 185 aa11.53□□□□□ -0.56
COL9A1-204ENST00000370496 MRPL41Q8IXM3 137 aaKnown RBP11.53□□□□□ -0.56
COL9A1-204ENST00000370496 LSM10Q969L4 123 aaKnown RBP11.53□□□□□ -0.56
COL9A1-204ENST00000370496 RAX2Q96IS3 184 aa11.53□□□□□ -0.56
COL9A1-204ENST00000370496 VWFP04275 2813 aa11.53□□□□□ -0.56
COL9A1-204ENST00000370496 PIGBOS1A0A0B4J2F0 54 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 A0A0G2JLM5 398 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 IGLC7A0M8Q6 106 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 FAM223BA6NKX1 122 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 DBX1A6NMT0 343 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 CCL24O00175 119 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 PLA2G10O15496 165 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 CD33P20138 364 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 RHOGP84095 191 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 KIAA0141Q14154 515 aaPredicted RBP11.52□□□□□ -0.57
COL9A1-204ENST00000370496 C19orf35Q6ZS72 473 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 FAM223AQ8IWN6 122 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 SELENOHQ8IZQ5 122 aaKnown RBP11.52□□□□□ -0.57
COL9A1-204ENST00000370496 LGI3Q8N145 548 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 SLC35G3Q8N808 338 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 OR10W1Q8NGF6 305 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 IL22RA2Q969J5 263 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 TMEM56Q96MV1 263 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 NDUFA4L2Q9NRX3 87 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 TMEM56-RWDD3S4R434 201 aa11.52□□□□□ -0.57
COL9A1-204ENST00000370496 A0A0G2JRQ6 117 aa11.51□□□□□ -0.57
COL9A1-204ENST00000370496 UPK1BO75841 260 aa11.51□□□□□ -0.57
COL9A1-204ENST00000370496 BRI3O95415 125 aa11.51□□□□□ -0.57
COL9A1-204ENST00000370496 P0C879 139 aa11.51□□□□□ -0.57
COL9A1-204ENST00000370496 OR13C7P0DN81 318 aa11.51□□□□□ -0.57
COL9A1-204ENST00000370496 MYCNOSP40205 109 aa11.51□□□□□ -0.57
COL9A1-204ENST00000370496 UBE2MP61081 183 aaKnown RBP11.51□□□□□ -0.57
COL9A1-204ENST00000370496 RUNX1Q01196 453 aa11.51□□□□□ -0.57
COL9A1-204ENST00000370496 PPP1R1AQ13522 171 aa11.51□□□□□ -0.57
COL9A1-204ENST00000370496 MZT2BQ6NZ67 158 aa11.51□□□□□ -0.57
COL9A1-204ENST00000370496 OR11H1Q8NG94 326 aa11.51□□□□□ -0.57
COL9A1-204ENST00000370496 ALX4Q9H161 411 aaPredicted RBP11.51□□□□□ -0.57
COL9A1-204ENST00000370496 C20orf85Q9H1P6 137 aa11.51□□□□□ -0.57
COL9A1-204ENST00000370496 PLEKHA3Q9HB20 300 aa11.51□□□□□ -0.57
COL9A1-204ENST00000370496 FLVCR2Q9UPI3 526 aa11.51□□□□□ -0.57
COL9A1-204ENST00000370496 I3L521 148 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 CYB5BO43169 146 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 OR2J3O76001 311 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 IFNA17P01571 189 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 HLA-AP01891 365 aaKnown RBP11.5□□□□□ -0.57
COL9A1-204ENST00000370496 CRYGCP07315 174 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 HIST1H1BP16401 226 aaKnown RBP11.5□□□□□ -0.57
COL9A1-204ENST00000370496 CTRB1P17538 263 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 HOXA1P49639 335 aaPredicted RBP11.5□□□□□ -0.57
COL9A1-204ENST00000370496 PRCDQ00LT1 54 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 WT1-ASQ06250 92 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 ZNF616Q08AN1 781 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 EXOSC2Q13868 293 aaKnown RBP11.5□□□□□ -0.57
COL9A1-204ENST00000370496 CTRB2Q6GPI1 263 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 ZNF429Q86V71 674 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 LINC00482Q8N8I6 264 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 NECAP1Q8NC96 275 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 DPF1Q92782 380 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 USMG5Q96IX5 58 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 P2RX4Q99571 388 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 CACNG5Q9UF02 275 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 PKD1L1Q8TDX9 2849 aa11.5□□□□□ -0.57
COL9A1-204ENST00000370496 A0A0B4J293 547 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 A0A0B4J2A0 478 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 ST8SIA3O43173 380 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 SFT2D2O95562 160 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 OR8U8P0C7N1 319 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 HSPE1P61604 102 aaKnown RBP11.49□□□□□ -0.57
COL9A1-204ENST00000370496 ATP5G2Q06055 141 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 ASAH1Q13510 395 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 C15orf32Q32M92 178 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 C4orf46Q504U0 113 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 SPINK9Q5DT21 86 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 OR1N2Q8NGR9 330 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 SHPKQ9UHJ6 478 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 TBC1D24Q9ULP9 559 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 MGAM2Q2M2H8 2515 aa11.49□□□□□ -0.57
COL9A1-204ENST00000370496 TRBV9A0A0B4J1U6 114 aa11.48□□□□□ -0.57
COL9A1-204ENST00000370496 FAM240BA0A1B0GVZ2 78 aa11.48□□□□□ -0.57
COL9A1-204ENST00000370496 DUXBA0A1W2PPF3 345 aa11.48□□□□□ -0.57
COL9A1-204ENST00000370496 ANKRD34BA5PLL1 514 aa11.48□□□□□ -0.57
COL9A1-204ENST00000370496 LINC01619G3V211 115 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms