RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 KCNS2Q9ULS6 477 aa10.41□□□□□ -0.74
DDX39A-202ENST00000324340 USP9YO00507 2555 aaPredicted RBP10.41□□□□□ -0.74
DDX39A-202ENST00000324340 MAST4O15021 2626 aa10.41□□□□□ -0.74
DDX39A-202ENST00000324340 IGHV4-30-2A0A087WSY4 118 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 PIGBOS1A0A0B4J2F0 54 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 C3orf85A0A1B0GTC6 90 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 LOC102723971A0A1B0GUV8 181 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 H0Y980 276 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 M0R1W7 72 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 EREGO14944 169 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 CDS2O95674 445 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 ZNF25P17030 456 aaPredicted RBP10.4□□□□□ -0.74
DDX39A-202ENST00000324340 F2RP25116 425 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 ZFP36P26651 326 aaKnown RBP10.4□□□□□ -0.74
DDX39A-202ENST00000324340 DOCK11Q5JSL3 2073 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 HIST2H2BCQ6DN03 193 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 C1orf122Q6ZSJ8 110 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 ODF3L1Q8IXM7 274 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 SLC35G3Q8N808 338 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 LEAP2Q969E1 77 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 MSI2Q96DH6 328 aaKnown RBP10.4□□□□□ -0.74
DDX39A-202ENST00000324340 TP53RKQ96S44 253 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 TMEM208Q9BTX3 173 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 RNF150Q9ULK6 438 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 LSM5Q9Y4Y9 91 aaKnown RBP10.4□□□□□ -0.74
DDX39A-202ENST00000324340 HECTD1Q9ULT8 2610 aa10.4□□□□□ -0.74
DDX39A-202ENST00000324340 IGHV4-61A0A0C4DH41 118 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 RNF212BA8MTL3 300 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 ZNF727A8MUV8 499 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 ENSAO43768 121 aaKnown RBP10.39□□□□□ -0.75
DDX39A-202ENST00000324340 PROP1O75360 226 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 FOXH1O75593 365 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 SLC25A16P16260 332 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 UCP1P25874 307 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 GPR12P47775 334 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 FAM3BP58499 235 aaPredicted RBP10.39□□□□□ -0.75
DDX39A-202ENST00000324340 CLEC12BQ2HXU8 276 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 ZNF343Q6P1L6 599 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 ZNF66Q6ZN08 573 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 LGI3Q8N145 548 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 OR4X1Q8NH49 305 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 TMEM170AQ8WVE7 144 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 C18orf12Q96KH6 178 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 TMEM56Q96MV1 263 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 RARRES2Q99969 163 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 SMIM3Q9BZL3 60 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 TMEM222Q9H0R3 208 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 TMEM133Q9H2Q1 129 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 TMEM56-RWDD3S4R434 201 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 UTP20O75691 2785 aaKnown RBP10.39□□□□□ -0.75
DDX39A-202ENST00000324340 MALRD1Q5VYJ5 2156 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 IGHV2-70DA0A0C4DH43 119 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 DUXBA0A1W2PPF3 345 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 J3QR06 171 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 RAB29O14966 203 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 TNFSF12O43508 249 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 IGHV3-7P01780 117 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 TYMSP04818 313 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 SNRPCP09234 159 aaKnown RBP10.39□□□□□ -0.75
DDX39A-202ENST00000324340 OR10J1P30954 320 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 GNG10P50151 68 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 SP6Q3SY56 376 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 TMEM182Q6ZP80 229 aaPredicted RBP10.39□□□□□ -0.75
DDX39A-202ENST00000324340 LIAT1Q6ZQX7 453 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 TCTEX1D1Q8N7M0 179 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 Q8N7P7 452 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 OR2G3Q8NGZ4 309 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 OR9G1Q8NH87 305 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 TNFRSF14Q92956 283 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 GPHA2Q96T91 129 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 HSD17B10Q99714 261 aaKnown RBP10.39□□□□□ -0.75
DDX39A-202ENST00000324340 SPIN2AQ99865 258 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 SPIN2BQ9BPZ2 258 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 C20orf144Q9BQM9 153 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 C11orf1Q9H5F2 150 aa10.39□□□□□ -0.75
DDX39A-202ENST00000324340 FBN2P35556 2912 aa10.38□□□□□ -0.75
DDX39A-202ENST00000324340 YLPM1P49750 1951 aaKnown RBP10.38□□□□□ -0.75
DDX39A-202ENST00000324340 A0A096LNT2 108 aa10.38□□□□□ -0.75
DDX39A-202ENST00000324340 SAA2-SAA4A0A096LPE2 208 aa10.38□□□□□ -0.75
DDX39A-202ENST00000324340 SAA2P0DJI9 122 aaPredicted RBP10.38□□□□□ -0.75
DDX39A-202ENST00000324340 ZNF137PP52743 207 aa10.38□□□□□ -0.75
DDX39A-202ENST00000324340 CATR1Q13166 79 aa10.38□□□□□ -0.75
DDX39A-202ENST00000324340 PRSS57Q6UWY2 283 aa10.38□□□□□ -0.75
DDX39A-202ENST00000324340 C1orf229Q6ZS94 237 aaPredicted RBP10.38□□□□□ -0.75
DDX39A-202ENST00000324340 ABHD12Q8N2K0 398 aa10.38□□□□□ -0.75
DDX39A-202ENST00000324340 IL22RA2Q969J5 263 aa10.38□□□□□ -0.75
DDX39A-202ENST00000324340 BSCL2Q96G97 398 aaPredicted RBP10.38□□□□□ -0.75
DDX39A-202ENST00000324340 SDF2L1Q9HCN8 221 aa10.38□□□□□ -0.75
DDX39A-202ENST00000324340 LIN7CQ9NUP9 197 aaKnown RBP10.38□□□□□ -0.75
DDX39A-202ENST00000324340 PRR13Q9NZ81 148 aa10.38□□□□□ -0.75
DDX39A-202ENST00000324340 ONECUT1Q9UBC0 465 aa10.38□□□□□ -0.75
DDX39A-202ENST00000324340 DOPEY2Q9Y3R5 2298 aa10.37□□□□□ -0.75
DDX39A-202ENST00000324340 IGHV2-26A0A0B4J1V2 119 aa10.37□□□□□ -0.75
DDX39A-202ENST00000324340 IGLV1-47P01700 117 aa10.37□□□□□ -0.75
DDX39A-202ENST00000324340 PFN1P07737 140 aaKnown RBP10.37□□□□□ -0.75
DDX39A-202ENST00000324340 PRTN3P24158 256 aa10.37□□□□□ -0.75
DDX39A-202ENST00000324340 ATP6V0CP27449 155 aa10.37□□□□□ -0.75
DDX39A-202ENST00000324340 DUTP33316 252 aaKnown RBP10.37□□□□□ -0.75
DDX39A-202ENST00000324340 RPL23AP62750 156 aaKnown RBP10.37□□□□□ -0.75
DDX39A-202ENST00000324340 RPL30P62888 115 aaKnown RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms