RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 GCHFRP30047 84 aa7.98□□□□□ -1.13
CUX1-201ENST00000292535 FAM169BQ8N8A8 192 aa7.98□□□□□ -1.13
CUX1-201ENST00000292535 GPX4P36969 197 aaPredicted RBP7.98□□□□□ -1.13
CUX1-201ENST00000292535 CRPP02741 224 aa7.98□□□□□ -1.13
CUX1-201ENST00000292535 V9GYH0 126 aa7.98□□□□□ -1.13
CUX1-201ENST00000292535 TMEM42Q69YG0 159 aa7.98□□□□□ -1.13
CUX1-201ENST00000292535 PEMTQ9UBM1 199 aa7.98□□□□□ -1.13
CUX1-201ENST00000292535 TRBV5-5A0A0J9YX44 114 aa7.98□□□□□ -1.13
CUX1-201ENST00000292535 RNF182Q8N6D2 247 aa7.98□□□□□ -1.13
CUX1-201ENST00000292535 NEU4Q8WWR8 484 aaPredicted RBP7.98□□□□□ -1.13
CUX1-201ENST00000292535 WFIKKN1Q96NZ8 548 aa7.98□□□□□ -1.13
CUX1-201ENST00000292535 TRGC2P03986 189 aa7.98□□□□□ -1.13
CUX1-201ENST00000292535 SRSF12Q8WXF0 261 aaKnown RBP7.98□□□□□ -1.13
CUX1-201ENST00000292535 HTN3P15516 51 aa7.98□□□□□ -1.13
CUX1-201ENST00000292535 VGLL1Q99990 258 aa7.98□□□□□ -1.13
CUX1-201ENST00000292535 A0A1W2PP11 408 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 TRBV20OR9-2A0A075B6H5 130 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 VENTXO95231 258 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 ITLN2Q8WWU7 325 aaPredicted RBP7.97□□□□□ -1.13
CUX1-201ENST00000292535 GGACTQ9BVM4 153 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 SOD3P08294 240 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 SRXN1Q9BYN0 137 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 NTN1O95631 604 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 ZNF506Q5JVG8 444 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 PNKDQ8N490 385 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 SCGB3A1Q96QR1 104 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 CELA2AP08217 269 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 RNASE4P34096 147 aaKnown RBP7.97□□□□□ -1.13
CUX1-201ENST00000292535 UNC119Q13432 240 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 YAE1D1Q9NRH1 226 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 SRIP30626 198 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 NEUROG1Q92886 237 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 TMEM106BQ9NUM4 274 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 KIAA1549Q9HCM3 1950 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 CHD8Q9HCK8 2581 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 OR11H12B2RN74 326 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 GTSCR1Q86UQ5 136 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 OR11H1Q8NG94 326 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 OR11H2Q8NH07 326 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 KLF14Q8TD94 323 aaPredicted RBP7.97□□□□□ -1.13
CUX1-201ENST00000292535 GPR146Q96CH1 333 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 DENND4AQ7Z401 1863 aa7.97□□□□□ -1.13
CUX1-201ENST00000292535 MOSP00540 346 aa7.96□□□□□ -1.13
CUX1-201ENST00000292535 C1orf162Q8NEQ5 155 aaPredicted RBP7.96□□□□□ -1.13
CUX1-201ENST00000292535 SNAI3Q3KNW1 292 aa7.96□□□□□ -1.13
CUX1-201ENST00000292535 A0A1W2PPC1 479 aa7.96□□□□□ -1.13
CUX1-201ENST00000292535 P2RY4P51582 365 aa7.96□□□□□ -1.13
CUX1-201ENST00000292535 C1QTNF12Q5T7M4 302 aa7.96□□□□□ -1.13
CUX1-201ENST00000292535 TMEM190Q8WZ59 177 aa7.96□□□□□ -1.13
CUX1-201ENST00000292535 TRGV2A0A075B6R0 118 aa7.96□□□□□ -1.13
CUX1-201ENST00000292535 REG1AP05451 166 aa7.96□□□□□ -1.13
CUX1-201ENST00000292535 CXCL3P19876 107 aa7.96□□□□□ -1.13
CUX1-201ENST00000292535 RUNX1Q01196 453 aa7.96□□□□□ -1.13
CUX1-201ENST00000292535 SLC25A47Q6Q0C1 308 aa7.96□□□□□ -1.13
CUX1-201ENST00000292535 DPM3Q9P2X0 92 aa7.96□□□□□ -1.13
CUX1-201ENST00000292535 C5orf66Q9H5L9 145 aa7.96□□□□□ -1.14
CUX1-201ENST00000292535 TYMSP04818 313 aa7.96□□□□□ -1.14
CUX1-201ENST00000292535 IFI27P40305 119 aaPredicted RBP7.96□□□□□ -1.14
CUX1-201ENST00000292535 ZPLD1Q8TCW7 415 aa7.96□□□□□ -1.14
CUX1-201ENST00000292535 SPAG8Q99932 426 aaPredicted RBP7.96□□□□□ -1.14
CUX1-201ENST00000292535 ACSF3Q4G176 576 aaPredicted RBP7.96□□□□□ -1.14
CUX1-201ENST00000292535 SCARF2Q96GP6 870 aaPredicted RBP7.96□□□□□ -1.14
CUX1-201ENST00000292535 TCF19Q9Y242 345 aa7.96□□□□□ -1.14
CUX1-201ENST00000292535 CRYBB3P26998 211 aa7.96□□□□□ -1.14
CUX1-201ENST00000292535 OTX1P32242 354 aaPredicted RBP7.96□□□□□ -1.14
CUX1-201ENST00000292535 NPCDR1Q9BY65 106 aa7.96□□□□□ -1.14
CUX1-201ENST00000292535 OSR1Q8TAX0 266 aaPredicted RBP7.96□□□□□ -1.14
CUX1-201ENST00000292535 LHFPL6Q9Y693 200 aa7.96□□□□□ -1.14
CUX1-201ENST00000292535 PRRC2CQ9Y520 2896 aaKnown RBP7.96□□□□□ -1.14
CUX1-201ENST00000292535 ZNF826PQ6ZT77 177 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 RPP21Q9H633 154 aaKnown RBP7.95□□□□□ -1.14
CUX1-201ENST00000292535 GLIPR1P48060 266 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 TOMM7Q9P0U1 55 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 NPIPB4C9JG80 1138 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 BIVMQ86UB2 503 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 PILRBQ9UKJ0 227 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 LEMD1Q68G75 181 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 GATAD1Q8WUU5 269 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 Q96M66 194 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 WDR82Q6UXN9 313 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 ACP7Q6ZNF0 438 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 BHLHA9Q7RTU4 235 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 VKORC1L1Q8N0U8 176 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 OR2K2Q8NGT1 345 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 TMEM167AQ8TBQ9 72 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 SHANK3Q9BYB0 1731 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 CMC4P56277 68 aaPredicted RBP7.95□□□□□ -1.14
CUX1-201ENST00000292535 CENPWQ5EE01 88 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 KLHDC2Q9Y2U9 406 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 HOXA3O43365 443 aaPredicted RBP7.95□□□□□ -1.14
CUX1-201ENST00000292535 LEPP41159 167 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 FAM90A1Q86YD7 464 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 OR11H4Q8NGC9 324 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 SDHCQ99643 169 aaPredicted RBP7.95□□□□□ -1.14
CUX1-201ENST00000292535 PLSCR2Q9NRY7 297 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 A0A1B0GUT8 65 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 IGKV3-20P01619 116 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 NRN1LQ496H8 165 aa7.95□□□□□ -1.14
CUX1-201ENST00000292535 NPIPB9F8W1W9 429 aa7.94□□□□□ -1.14
CUX1-201ENST00000292535 NPIPB7O75200 414 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms