RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 BRWD1-AS2P59051 145 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 RHOGP84095 191 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 DEFA5Q01523 94 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 RPEL1Q2QD12 228 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 FAM209BQ5JX69 171 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 VKORC1L1Q8N0U8 176 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 TSPAN14Q8NG11 270 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 OR5AP2Q8NGF4 316 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 OR13F1Q8NGS4 319 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 PHLDA1Q8WV24 401 aaPredicted RBP12.2□□□□□ -0.46
CLN3-264ENST00000637985 SECTM1Q8WVN6 248 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 GIMAP1Q8WWP7 306 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 YIPF6Q96EC8 236 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 GGTLC1Q9BX51 225 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 AKIP1Q9NQ31 210 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 CCL28Q9NRJ3 127 aa12.2□□□□□ -0.46
CLN3-264ENST00000637985 RBMXL2O75526 392 aaKnown RBP12.19□□□□□ -0.46
CLN3-264ENST00000637985 PTHLHP12272 177 aa12.19□□□□□ -0.46
CLN3-264ENST00000637985 RPS19P39019 145 aaKnown RBP12.19□□□□□ -0.46
CLN3-264ENST00000637985 ZNF45Q02386 682 aa12.19□□□□□ -0.46
CLN3-264ENST00000637985 ATP5G2Q06055 141 aa12.19□□□□□ -0.46
CLN3-264ENST00000637985 UBE2NLQ5JXB2 153 aa12.19□□□□□ -0.46
CLN3-264ENST00000637985 NECAP1Q8NC96 275 aa12.19□□□□□ -0.46
CLN3-264ENST00000637985 ZNF257Q9Y2Q1 563 aa12.19□□□□□ -0.46
CLN3-264ENST00000637985 PKD1P98161 4303 aa12.18□□□□□ -0.46
CLN3-264ENST00000637985 NPIPB5A8MRT5 1133 aa12.18□□□□□ -0.46
CLN3-264ENST00000637985 RBFOX2O43251 390 aaKnown RBP eCLIP12.18□□□□□ -0.46
CLN3-264ENST00000637985 TRBV12-3P01733 135 aa12.18□□□□□ -0.46
CLN3-264ENST00000637985 TGFBR1P36897 503 aa12.18□□□□□ -0.46
CLN3-264ENST00000637985 RPL27AP46776 148 aaKnown RBP12.18□□□□□ -0.46
CLN3-264ENST00000637985 CATR1Q13166 79 aa12.18□□□□□ -0.46
CLN3-264ENST00000637985 EXOSC2Q13868 293 aaKnown RBP12.18□□□□□ -0.46
CLN3-264ENST00000637985 C10orf55Q5SWW7 151 aa12.18□□□□□ -0.46
CLN3-264ENST00000637985 OR4A5Q8NH83 315 aa12.18□□□□□ -0.46
CLN3-264ENST00000637985 BORCS5Q969J3 196 aa12.18□□□□□ -0.46
CLN3-264ENST00000637985 SLC5A7Q9GZV3 580 aa12.18□□□□□ -0.46
CLN3-264ENST00000637985 IFT46Q9NQC8 304 aa12.18□□□□□ -0.46
CLN3-264ENST00000637985 SLC2A9Q9NRM0 540 aa12.18□□□□□ -0.46
CLN3-264ENST00000637985 PEMTQ9UBM1 199 aa12.18□□□□□ -0.46
CLN3-264ENST00000637985 HSPG2P98160 4391 aa12.18□□□□□ -0.46
CLN3-264ENST00000637985 HERC1Q15751 4861 aa12.17□□□□□ -0.46
CLN3-264ENST00000637985 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.17□□□□□ -0.46
CLN3-264ENST00000637985 DPPA5A6NC42 116 aa12.17□□□□□ -0.46
CLN3-264ENST00000637985 TEX22C9J3V5 150 aa12.17□□□□□ -0.46
CLN3-264ENST00000637985 TNFSF12O43508 249 aa12.17□□□□□ -0.46
CLN3-264ENST00000637985 PRH1P02810 166 aa12.17□□□□□ -0.46
CLN3-264ENST00000637985 ZNF735P0CB33 412 aa12.17□□□□□ -0.46
CLN3-264ENST00000637985 BMI1P35226 326 aa12.17□□□□□ -0.46
CLN3-264ENST00000637985 DEFB114Q30KQ6 69 aa12.17□□□□□ -0.46
CLN3-264ENST00000637985 SPAG16Q8N0X2 631 aa12.17□□□□□ -0.46
CLN3-264ENST00000637985 GPHA2Q96T91 129 aa12.17□□□□□ -0.46
CLN3-264ENST00000637985 ZC4H2Q9NQZ6 224 aa12.17□□□□□ -0.46
CLN3-264ENST00000637985 BET1LQ9NYM9 111 aa12.17□□□□□ -0.46
CLN3-264ENST00000637985 TP53TG1Q9Y2A0 90 aa12.17□□□□□ -0.46
CLN3-264ENST00000637985 LOC102724200A0A096LPH7 203 aaPredicted RBP12.16□□□□□ -0.46
CLN3-264ENST00000637985 HMX3A6NHT5 357 aa12.16□□□□□ -0.46
CLN3-264ENST00000637985 HPRT1P00492 218 aa12.16□□□□□ -0.46
CLN3-264ENST00000637985 CRYGCP07315 174 aa12.16□□□□□ -0.46
CLN3-264ENST00000637985 IL6RP08887 468 aaPredicted RBP12.16□□□□□ -0.46
CLN3-264ENST00000637985 TAS2R31P59538 309 aa12.16□□□□□ -0.46
CLN3-264ENST00000637985 FXYD4P59646 89 aa12.16□□□□□ -0.46
CLN3-264ENST00000637985 LSM3P62310 102 aaKnown RBP12.16□□□□□ -0.46
CLN3-264ENST00000637985 RPL8P62917 257 aaKnown RBP12.16□□□□□ -0.46
CLN3-264ENST00000637985 GUCA2BQ16661 112 aa12.16□□□□□ -0.46
CLN3-264ENST00000637985 C15orf32Q32M92 178 aa12.16□□□□□ -0.46
CLN3-264ENST00000637985 TMEM69Q5SWH9 247 aa12.16□□□□□ -0.46
CLN3-264ENST00000637985 DHRS11Q6UWP2 260 aa12.16□□□□□ -0.46
CLN3-264ENST00000637985 SAMD12Q8N8I0 201 aa12.16□□□□□ -0.46
CLN3-264ENST00000637985 CD300LFQ8TDQ1 290 aa12.16□□□□□ -0.46
CLN3-264ENST00000637985 FYTTD1Q96QD9 318 aaKnown RBP12.16□□□□□ -0.46
CLN3-264ENST00000637985 ANAPC10Q9UM13 185 aa12.16□□□□□ -0.46
CLN3-264ENST00000637985 MEIS3P1A6NDR6 274 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 E7EUB6 86 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 BMPR1BO00238 502 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 SULT1C2O00338 296 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 OR2J3O76001 311 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 DHFRP00374 187 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 FCER2P06734 321 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 NQO2P16083 231 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 HLA-GP17693 338 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 TAS2R20P59543 309 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 HERV-K104P61576 105 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 POU2AF1Q16633 256 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 KLK9Q2XQG4 91 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 OR4A47Q6IF82 309 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 ZNF818PQ6ZRF7 136 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 SSX9Q7RTT3 188 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 SLC25A46Q96AG3 418 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 EHFQ9NZC4 300 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 KLK9Q9UKQ9 250 aa12.15□□□□□ -0.46
CLN3-264ENST00000637985 SPRY2O43597 315 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 FGF2P09038 288 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 HIST1H1BP16401 226 aaKnown RBP12.14□□□□□ -0.47
CLN3-264ENST00000637985 NAT1P18440 290 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 PSMB6P28072 239 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 GNRHRP30968 328 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 PRSS3P35030 304 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 TAS2R46P59540 309 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 Q6ZWC4 215 aa12.14□□□□□ -0.47
CLN3-264ENST00000637985 SLC16A13Q7RTY0 426 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms