RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 IGHV3OR16-10A0A075B7F0 116 aa14.77□□□□□ -0.05
CLN3-254ENST00000637050 SPDEFO95238 335 aa14.77□□□□□ -0.05
CLN3-254ENST00000637050 LY86O95711 162 aa14.77□□□□□ -0.05
CLN3-254ENST00000637050 SNRNP70P08621 437 aaKnown RBP14.77□□□□□ -0.05
CLN3-254ENST00000637050 IGHV4-38-2P0DP08 117 aa14.77□□□□□ -0.05
CLN3-254ENST00000637050 RPL8P62917 257 aaKnown RBP14.77□□□□□ -0.05
CLN3-254ENST00000637050 MRGPRG-AS1Q2M3A8 158 aa14.77□□□□□ -0.05
CLN3-254ENST00000637050 SPINK9Q5DT21 86 aa14.77□□□□□ -0.05
CLN3-254ENST00000637050 EAF1Q96JC9 268 aaPredicted RBP14.77□□□□□ -0.05
CLN3-254ENST00000637050 H3BP45 60 aa14.76□□□□□ -0.05
CLN3-254ENST00000637050 MYOD1P15172 320 aa14.76□□□□□ -0.05
CLN3-254ENST00000637050 NHLH2Q02577 135 aa14.76□□□□□ -0.05
CLN3-254ENST00000637050 KLF17Q5JT82 389 aaPredicted RBP14.76□□□□□ -0.05
CLN3-254ENST00000637050 SLC51BQ86UW2 128 aa14.76□□□□□ -0.05
CLN3-254ENST00000637050 OR2T10Q8NGZ9 312 aa14.76□□□□□ -0.05
CLN3-254ENST00000637050 OR5B3Q8NH48 314 aa14.76□□□□□ -0.05
CLN3-254ENST00000637050 BSCL2Q96G97 398 aaPredicted RBP14.76□□□□□ -0.05
CLN3-254ENST00000637050 ZNF430Q9H8G1 570 aaPredicted RBP14.76□□□□□ -0.05
CLN3-254ENST00000637050 CYTL1Q9NRR1 136 aa14.76□□□□□ -0.05
CLN3-254ENST00000637050 TPSG1Q9NRR2 321 aa14.76□□□□□ -0.05
CLN3-254ENST00000637050 TMA7Q9Y2S6 64 aaKnown RBP14.76□□□□□ -0.05
CLN3-254ENST00000637050 SIGLEC9Q9Y336 463 aa14.76□□□□□ -0.05
CLN3-254ENST00000637050 TEX50A0A1B0GTY4 177 aa14.75□□□□□ -0.05
CLN3-254ENST00000637050 LOC105371267A0A1B0GV96 52 aa14.75□□□□□ -0.05
CLN3-254ENST00000637050 TAAR5O14804 337 aa14.75□□□□□ -0.05
CLN3-254ENST00000637050 CD24P25063 80 aa14.75□□□□□ -0.05
CLN3-254ENST00000637050 VDAC2P45880 294 aaPredicted RBP14.75□□□□□ -0.05
CLN3-254ENST00000637050 BAXQ07812 192 aa14.75□□□□□ -0.05
CLN3-254ENST00000637050 CLEC9AQ6UXN8 241 aa14.75□□□□□ -0.05
CLN3-254ENST00000637050 BRD3OSQ6XYD6 125 aa14.75□□□□□ -0.05
CLN3-254ENST00000637050 Q8N6K4 173 aa14.75□□□□□ -0.05
CLN3-254ENST00000637050 NPBQ8NG41 125 aa14.75□□□□□ -0.05
CLN3-254ENST00000637050 FBXL17Q9UF56 701 aa14.75□□□□□ -0.05
CLN3-254ENST00000637050 NBPF19A0A087WUL8 3843 aa14.75□□□□□ -0.05
CLN3-254ENST00000637050 UNC79Q9P2D8 2635 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 BRS3P32247 399 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 F2RL1P55085 397 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 PRCDQ00LT1 54 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 FBLN7Q53RD9 439 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 SPANXN5Q5MJ07 72 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 CYB5R2Q6BCY4 276 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 TEX261Q6UWH6 196 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 THNSL2Q86YJ6 484 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 METTL1Q9UBP6 276 aaKnown RBP14.74□□□□□ -0.05
CLN3-254ENST00000637050 U3KQ87 197 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.74□□□□□ -0.05
CLN3-254ENST00000637050 TET2Q6N021 2002 aaPredicted RBP14.74□□□□□ -0.05
CLN3-254ENST00000637050 PRRC2AP48634 2157 aaKnown RBP14.74□□□□□ -0.05
CLN3-254ENST00000637050 RRHO14718 337 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 NDUFA3O95167 84 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 SULT1A1P50225 295 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 PJVKQ0ZLH3 352 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 HES1Q14469 280 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 HNF4GQ14541 408 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 PRSS8Q16651 343 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 TMEM14EPQ6UXP3 125 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 MMD2Q8IY49 270 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 ZNF471Q9BX82 626 aaPredicted RBP14.74□□□□□ -0.05
CLN3-254ENST00000637050 COMMD5Q9GZQ3 224 aa14.74□□□□□ -0.05
CLN3-254ENST00000637050 FASNP49327 2511 aaKnown RBP14.73□□□□□ -0.05
CLN3-254ENST00000637050 NBR2O15453 112 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 CST7O76096 145 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 CFDP00746 253 aaPredicted RBP14.73□□□□□ -0.05
CLN3-254ENST00000637050 FAM106CPP0CH98 169 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 HOXA1P49639 335 aaPredicted RBP14.73□□□□□ -0.05
CLN3-254ENST00000637050 MMDQ15546 238 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 PPP1R27Q86WC6 154 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 STX12Q86Y82 276 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 CIARTQ8N365 385 aaPredicted RBP14.73□□□□□ -0.05
CLN3-254ENST00000637050 OR8H1Q8NGG4 311 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 OR1L8Q8NGR8 309 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 OR4C12Q96R67 309 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 CLCC1Q96S66 551 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 SMIM3Q9BZL3 60 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 MEGF9Q9H1U4 602 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 HIPK2Q9H2X6 1198 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 FBXL15Q9H469 300 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 NDUFA4L2Q9NRX3 87 aa14.73□□□□□ -0.05
CLN3-254ENST00000637050 STRAPQ9Y3F4 350 aaKnown RBP14.73□□□□□ -0.05
CLN3-254ENST00000637050 A0A0U1RQK1 487 aa14.72□□□□□ -0.05
CLN3-254ENST00000637050 MAS1LP35410 378 aa14.72□□□□□ -0.05
CLN3-254ENST00000637050 UBA52P62987 128 aaKnown RBP14.72□□□□□ -0.05
CLN3-254ENST00000637050 TMEM267Q0VDI3 215 aaPredicted RBP14.72□□□□□ -0.05
CLN3-254ENST00000637050 FAM120AOSQ5T036 256 aa14.72□□□□□ -0.05
CLN3-254ENST00000637050 STOML3Q8TAV4 291 aa14.72□□□□□ -0.05
CLN3-254ENST00000637050 HEYLQ9NQ87 328 aaPredicted RBP14.72□□□□□ -0.05
CLN3-254ENST00000637050 OPN1MWP04001 364 aa14.71□□□□□ -0.05
CLN3-254ENST00000637050 METTL15P1P0C7V9 234 aa14.71□□□□□ -0.05
CLN3-254ENST00000637050 OPN1MW2P0DN77 364 aa14.71□□□□□ -0.05
CLN3-254ENST00000637050 OPN1MW3P0DN78 364 aa14.71□□□□□ -0.05
CLN3-254ENST00000637050 DYNLT3P51808 116 aa14.71□□□□□ -0.05
CLN3-254ENST00000637050 BPIFB3P59826 476 aa14.71□□□□□ -0.05
CLN3-254ENST00000637050 HAPLN4Q86UW8 402 aa14.71□□□□□ -0.05
CLN3-254ENST00000637050 STPG2Q8N412 459 aa14.71□□□□□ -0.05
CLN3-254ENST00000637050 ZNF680Q8NEM1 530 aa14.71□□□□□ -0.05
CLN3-254ENST00000637050 ST8SIA2Q92186 375 aa14.71□□□□□ -0.05
CLN3-254ENST00000637050 PLEKHA3Q9HB20 300 aa14.71□□□□□ -0.05
CLN3-254ENST00000637050 WFDC1Q9HC57 220 aa14.71□□□□□ -0.05
CLN3-254ENST00000637050 ENY2Q9NPA8 101 aa14.71□□□□□ -0.05
CLN3-254ENST00000637050 CGB1A6NKQ9 187 aa14.71□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms