RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 ZNF562Q6V9R5 426 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 FOXI2Q6ZQN5 318 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 SSC4DQ8WTU2 575 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 SCGB2A1O75556 95 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 DXOO77932 396 aaKnown RBP5.74□□□□□ -1.49
SCN1A-213ENST00000636759 COX8AP10176 69 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 GP1BBP13224 206 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 ATP5G2Q06055 141 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 IZUMO4Q1ZYL8 232 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 TIGITQ495A1 244 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 FAM69BQ5VUD6 431 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 Q6ZSR6 202 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 C8orf86Q6ZUL3 223 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 PRO3102Q9H379 93 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 C19orf25Q9UFG5 118 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-213ENST00000636759 H0Y980 276 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 CGAP01215 116 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 ID1P41134 155 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 TCEA2Q15560 299 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 ETDBQ3ZM63 59 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 TDHQ8IZJ6 230 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 BCORP1Q8N888 145 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 OR4A16Q8NH70 328 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 NEU4Q8WWR8 484 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-213ENST00000636759 RDH5Q92781 318 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 VGLL1Q99990 258 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 OR2D2Q9H210 308 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 ZNF576Q9H609 170 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 SH2D2AQ9NP31 389 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 TNFRSF19Q9NS68 423 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 MBNL3Q9NUK0 354 aaKnown RBP5.73□□□□□ -1.49
SCN1A-213ENST00000636759 TNRC6AQ8NDV7 1962 aaKnown RBP5.73□□□□□ -1.49
SCN1A-213ENST00000636759 PDE4DIPQ5VU43 2346 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 KLF7O75840 302 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-213ENST00000636759 CER1O95813 267 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 RPL31P62899 125 aaKnown RBP5.73□□□□□ -1.49
SCN1A-213ENST00000636759 ZNF818PQ6ZRF7 136 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 SFTPA2Q8IWL1 248 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 SPAG8Q99932 426 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-213ENST00000636759 SPTY2D1-AS1A0A0U1RR47 76 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 C19orf67A6NJJ6 358 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 F8W1H4 67 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 NKX2-8O15522 239 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 SMIM13P0DJ93 91 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 DEFA4P12838 97 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 CD38P28907 300 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 CCL7P80098 99 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 SRSF6Q13247 344 aaKnown RBP5.73□□□□□ -1.49
SCN1A-213ENST00000636759 OR8B8Q15620 311 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 OR13H1Q8NG92 308 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 RERGQ96A58 199 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-213ENST00000636759 GRAMD2BQ96HH9 432 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 COL25A1Q9BXS0 654 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-213ENST00000636759 HES4Q9HCC6 221 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 CCL28Q9NRJ3 127 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 C1RLQ9NZP8 487 aa5.73□□□□□ -1.49
SCN1A-213ENST00000636759 FREM2Q5SZK8 3169 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 A1L4Q6 167 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 LRRC30A6NM36 301 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 GPR12P47775 334 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 FXYD3Q14802 87 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 CARD17Q5XLA6 110 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 ZDHHC23Q8IYP9 409 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 KIR3DL3Q8N743 410 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 PP6455Q8WZ26 134 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 RAB1CQ92928 201 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 NDFIP1Q9BT67 221 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 SPANXB1Q9NS25 103 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-213ENST00000636759 R4GN57 208 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 V9GYV3 84 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 ARHGAP21Q5T5U3 1957 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 CEP192Q8TEP8 1941 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 SYNGR1O43759 233 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 PPP1CAP62136 330 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 RPL8P62917 257 aaKnown RBP5.72□□□□□ -1.49
SCN1A-213ENST00000636759 GRB2P62993 217 aaKnown RBP5.72□□□□□ -1.49
SCN1A-213ENST00000636759 PSG7Q13046 419 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 RAX2Q96IS3 184 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 ADTRPQ96IZ2 230 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 GGTLC1Q9BX51 225 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 HRASLS2Q9NWW9 162 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 TECRQ9NZ01 308 aaKnown RBP5.72□□□□□ -1.49
SCN1A-213ENST00000636759 KIAA1549Q9HCM3 1950 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 KIR2DS5A0A0G2JLQ3 304 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 A0A0G2JNG1 304 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 A0A0G2JRQ6 117 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 H0YGG7 62 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 KIR2DS3K7RE56 304 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 BRI3O95415 125 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 CELA2BP08218 269 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-213ENST00000636759 SP9P0CG40 484 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 PLA2G5P39877 138 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 MFAP2P55001 183 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 KIR2DS5Q14953 304 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 LHFPL2Q6ZUX7 228 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 OOSP2Q86WS3 158 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 NPCDR1Q9BY65 106 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 LY96Q9Y6Y9 160 aa5.72□□□□□ -1.49
SCN1A-213ENST00000636759 TEX50A0A1B0GTY4 177 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 C9JCJ5 164 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms