RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 FOXA2Q9Y261 457 aaPredicted RBP15□□□□□ -0.01
SQSTM1-216ENST00000626660 PIGBOS1A0A0B4J2F0 54 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 TCRBV4S1A1TA0A5B7 111 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 IGHG4P01861 327 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 OPN1MWP04001 364 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 ELANEP08246 267 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 OPN1MW2P0DN77 364 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 OPN1MW3P0DN78 364 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 SLC6A1P30531 599 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 SUPT4H1P63272 117 aaKnown RBP14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 CFHR3Q02985 330 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 FOXE3Q13461 319 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 TMEM187Q14656 261 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 CXorf66Q5JRM2 361 aaPredicted RBP14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 C10orf55Q5SWW7 151 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 TMEM268Q5VZI3 342 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 MINDY2Q8NBR6 621 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 FKBP11Q9NYL4 201 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 FLVCR2Q9UPI3 526 aa14.99□□□□□ -0.01
SQSTM1-216ENST00000626660 A0A1W2PN81 502 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 RBMXL2O75526 392 aaKnown RBP14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 TCRBP04435 133 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 OR9G9P0C7N8 305 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 PPIFP30405 207 aaKnown RBP14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 CHRNA7P36544 502 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 IFITM3Q01628 133 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 C19orf54Q5BKX5 351 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 KHDC1LQ5JSQ8 128 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 TMEM65Q6PI78 240 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 SELENOHQ8IZQ5 122 aaKnown RBP14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 LGI3Q8N145 548 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 OR4A16Q8NH70 328 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 ENKURQ8TC29 256 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 IL22RA2Q969J5 263 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 TMEM56Q96MV1 263 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 FYTTD1Q96QD9 318 aaKnown RBP14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 C20orf85Q9H1P6 137 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 TMEM56-RWDD3S4R434 201 aa14.98□□□□□ -0.01
SQSTM1-216ENST00000626660 IGKV1-5P01602 117 aa14.97□□□□□ -0.01
SQSTM1-216ENST00000626660 RAB25P57735 213 aa14.97□□□□□ -0.01
SQSTM1-216ENST00000626660 CD83Q01151 205 aa14.97□□□□□ -0.01
SQSTM1-216ENST00000626660 PPP1R1AQ13522 171 aa14.97□□□□□ -0.01
SQSTM1-216ENST00000626660 FAM219AQ8IW50 185 aa14.97□□□□□ -0.01
SQSTM1-216ENST00000626660 OR5M8Q8NGP6 311 aa14.97□□□□□ -0.01
SQSTM1-216ENST00000626660 OR1L8Q8NGR8 309 aa14.97□□□□□ -0.01
SQSTM1-216ENST00000626660 LHFPL5Q8TAF8 219 aa14.97□□□□□ -0.01
SQSTM1-216ENST00000626660 CITED2Q99967 270 aaPredicted RBP14.97□□□□□ -0.01
SQSTM1-216ENST00000626660 NSG2Q9Y328 171 aa14.97□□□□□ -0.01
SQSTM1-216ENST00000626660 OR51B2Q9Y5P1 312 aa14.97□□□□□ -0.01
SQSTM1-216ENST00000626660 TSSC4Q9Y5U2 329 aaPredicted RBP14.97□□□□□ -0.01
SQSTM1-216ENST00000626660 C15orf61A6NNL5 157 aa14.96□□□□□ -0.01
SQSTM1-216ENST00000626660 SFT2D2O95562 160 aa14.96□□□□□ -0.01
SQSTM1-216ENST00000626660 APELAP0DMC3 54 aa14.96□□□□□ -0.01
SQSTM1-216ENST00000626660 PF4V1P10720 104 aa14.96□□□□□ -0.01
SQSTM1-216ENST00000626660 OR2B8PP59922 312 aa14.96□□□□□ -0.01
SQSTM1-216ENST00000626660 C4orf46Q504U0 113 aa14.96□□□□□ -0.01
SQSTM1-216ENST00000626660 TCTEX1D4Q5JR98 221 aa14.96□□□□□ -0.01
SQSTM1-216ENST00000626660 NDUFA11Q86Y39 141 aa14.96□□□□□ -0.01
SQSTM1-216ENST00000626660 CASTOR1Q8WTX7 329 aa14.96□□□□□ -0.01
SQSTM1-216ENST00000626660 QTRT1Q9BXR0 403 aaKnown RBP14.96□□□□□ -0.01
SQSTM1-216ENST00000626660 NUDT15Q9NV35 164 aa14.96□□□□□ -0.01
SQSTM1-216ENST00000626660 IGLV1-40P01703 118 aa14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 HLA-AP01891 365 aaKnown RBP14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 TRAPPC2P0DI81 140 aa14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 TRAPPC2BP0DI82 140 aa14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 MYOD1P15172 320 aa14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 ANXA7P20073 488 aaKnown RBP14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 THOC7Q6I9Y2 204 aaKnown RBP14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 RNF152Q8N8N0 203 aa14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 OR5T1Q8NG75 326 aa14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 OR5B3Q8NH48 314 aa14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 HINT2Q9BX68 163 aa14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 ZNF355PQ9NSJ1 428 aa14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 ZFP57Q9NU63 452 aa14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 TMEM14BQ9NUH8 114 aa14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 COA4Q9NYJ1 87 aa14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 PRR13Q9NZ81 148 aa14.95□□□□□ -0.02
SQSTM1-216ENST00000626660 TRAV6A0A075B6T7 132 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 A0A0B4J2A0 478 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 TEX50A0A1B0GTY4 177 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 HMX3A6NHT5 357 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 TEX22C9J3V5 150 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 M0QZ24 198 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 RPLP1P05386 114 aaKnown RBP14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 H2AFB2P0C5Z0 115 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 OR4E1P0C645 316 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 P0C879 139 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 PSMB8P28062 276 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 IZUMO4Q1ZYL8 232 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 C2orf68Q2NKX9 166 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 NSUN5P1Q3KNT7 163 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 ASPHD1Q5U4P2 390 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 HIST2H2BDQ6DRA6 164 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 SLC35G3Q8N808 338 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 FAM110DQ8TAY7 271 aaPredicted RBP14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 LSM10Q969L4 123 aaKnown RBP14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 SRSF8Q9BRL6 282 aaKnown RBP14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 ALX4Q9H161 411 aaPredicted RBP14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 SHPKQ9UHJ6 478 aa14.94□□□□□ -0.02
SQSTM1-216ENST00000626660 DUXBA0A1W2PPF3 345 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms