RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 ALX4Q9H161 411 aaPredicted RBP13.05□□□□□ -0.32
TRIM28-215ENST00000601150 NDUFA13Q9P0J0 144 aa13.05□□□□□ -0.32
TRIM28-215ENST00000601150 TRAV3A0A0B4J244 114 aa13.04□□□□□ -0.32
TRIM28-215ENST00000601150 HMX3A6NHT5 357 aa13.04□□□□□ -0.32
TRIM28-215ENST00000601150 TEX22C9J3V5 150 aa13.04□□□□□ -0.32
TRIM28-215ENST00000601150 KRASP01116 189 aa13.04□□□□□ -0.32
TRIM28-215ENST00000601150 RPA2P15927 270 aa13.04□□□□□ -0.32
TRIM28-215ENST00000601150 PI3P19957 117 aa13.04□□□□□ -0.32
TRIM28-215ENST00000601150 CADM3Q8N126 398 aa13.04□□□□□ -0.32
TRIM28-215ENST00000601150 OR4C16Q8NGL9 310 aa13.04□□□□□ -0.32
TRIM28-215ENST00000601150 OR13C8Q8NGS7 320 aa13.04□□□□□ -0.32
TRIM28-215ENST00000601150 DPPA5A6NC42 116 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 E7EUB6 86 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 LINC01619G3V211 115 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 MYOD1P15172 320 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 PTBP1P26599 531 aaKnown RBP eCLIP13.03□□□□□ -0.32
TRIM28-215ENST00000601150 G6PCP35575 357 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 ECI1P42126 302 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 PIGPP57054 158 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 PYDC2Q56P42 97 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 FOXB2Q5VYV0 432 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 CCDC71LQ8N9Z2 235 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 MARCH1Q8TCQ1 289 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 USMG5Q96IX5 58 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 THAP7Q9BT49 309 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-215ENST00000601150 COMMD5Q9GZQ3 224 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 ZNF257Q9Y2Q1 563 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 V9GYH0 126 aa13.03□□□□□ -0.32
TRIM28-215ENST00000601150 A0A1B0GW64 132 aa13.02□□□□□ -0.33
TRIM28-215ENST00000601150 NPIPB5A8MRT5 1133 aa13.02□□□□□ -0.33
TRIM28-215ENST00000601150 SNAPC5O75971 98 aa13.02□□□□□ -0.33
TRIM28-215ENST00000601150 HSPB1P04792 205 aaKnown RBP13.02□□□□□ -0.33
TRIM28-215ENST00000601150 SERPINE2P07093 398 aa13.02□□□□□ -0.33
TRIM28-215ENST00000601150 CTSDP07339 412 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-215ENST00000601150 OR2B8PP59922 312 aa13.02□□□□□ -0.33
TRIM28-215ENST00000601150 CCDC190Q86UF4 302 aa13.02□□□□□ -0.33
TRIM28-215ENST00000601150 MRGPRFQ96AM1 343 aa13.02□□□□□ -0.33
TRIM28-215ENST00000601150 PRRT1Q99946 306 aa13.02□□□□□ -0.33
TRIM28-215ENST00000601150 COPZ2Q9P299 210 aa13.02□□□□□ -0.33
TRIM28-215ENST00000601150 IGHV4OR15-8A0A075B7B6 117 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 A0A087WW49 117 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 CGB1A6NKQ9 187 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 FAM223BA6NKX1 122 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 H0Y980 276 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 PRH1P02810 166 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 AREGP15514 252 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 RHOGP84095 191 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 DEFA5Q01523 94 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 ZNF45Q02386 682 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 SURF2Q15527 256 aaPredicted RBP13.01□□□□□ -0.33
TRIM28-215ENST00000601150 ZNF79Q15937 498 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 SPANXN2Q5MJ10 180 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 FAM223AQ8IWN6 122 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 Q8N402 240 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 SRSF8Q9BRL6 282 aaKnown RBP13.01□□□□□ -0.33
TRIM28-215ENST00000601150 SLC2A8Q9NY64 477 aa13.01□□□□□ -0.33
TRIM28-215ENST00000601150 C14orf166Q9Y224 244 aaKnown RBP13.01□□□□□ -0.33
TRIM28-215ENST00000601150 TRBV9A0A0B4J1U6 114 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 C3orf85A0A1B0GTC6 90 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 ANKRD34BA5PLL1 514 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 WIPF1O43516 503 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 DHFRP00374 187 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 CRYGCP07315 174 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 PSMB6P28072 239 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 ETV6P41212 452 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 SLURP1P55000 103 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 PDLIM3Q53GG5 364 aaPredicted RBP13□□□□□ -0.33
TRIM28-215ENST00000601150 C9orf66Q5T8R8 295 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 THOC7Q6I9Y2 204 aaKnown RBP13□□□□□ -0.33
TRIM28-215ENST00000601150 ZNF343Q6P1L6 599 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 REC114Q7Z4M0 266 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 NECAP1Q8NC96 275 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 OR51S1Q8NGJ8 323 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 DCUN1D4Q92564 292 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 TRIM63Q969Q1 353 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 SEC22AQ96IW7 307 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 TP53RKQ96S44 253 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 TSC22D3Q99576 134 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 QTRT1Q9BXR0 403 aaKnown RBP13□□□□□ -0.33
TRIM28-215ENST00000601150 RANGRFQ9HD47 186 aaPredicted RBP13□□□□□ -0.33
TRIM28-215ENST00000601150 AKIP1Q9NQ31 210 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 SCP2D1Q9UJQ7 156 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 PRNDQ9UKY0 176 aa13□□□□□ -0.33
TRIM28-215ENST00000601150 TEX50A0A1B0GTY4 177 aa12.99□□□□□ -0.33
TRIM28-215ENST00000601150 SEC14L6B5MCN3 397 aa12.99□□□□□ -0.33
TRIM28-215ENST00000601150 OVOL1O14753 267 aa12.99□□□□□ -0.33
TRIM28-215ENST00000601150 RBMXL2O75526 392 aaKnown RBP12.99□□□□□ -0.33
TRIM28-215ENST00000601150 B3GALNT1O75752 331 aa12.99□□□□□ -0.33
TRIM28-215ENST00000601150 IGKV1-39P01597 117 aa12.99□□□□□ -0.33
TRIM28-215ENST00000601150 PRB2P02812 416 aaPredicted RBP12.99□□□□□ -0.33
TRIM28-215ENST00000601150 IGKV1D-39P04432 117 aa12.99□□□□□ -0.33
TRIM28-215ENST00000601150 CTRB1P17538 263 aa12.99□□□□□ -0.33
TRIM28-215ENST00000601150 HOXD3P31249 432 aaPredicted RBP12.99□□□□□ -0.33
TRIM28-215ENST00000601150 FAUP35544 74 aaKnown RBP12.99□□□□□ -0.33
TRIM28-215ENST00000601150 AP3S2P59780 193 aa12.99□□□□□ -0.33
TRIM28-215ENST00000601150 ATP5G2Q06055 141 aa12.99□□□□□ -0.33
TRIM28-215ENST00000601150 CTRB2Q6GPI1 263 aa12.99□□□□□ -0.33
TRIM28-215ENST00000601150 H2BFWTQ7Z2G1 175 aa12.99□□□□□ -0.33
TRIM28-215ENST00000601150 OR6Q1Q8NGQ2 317 aa12.99□□□□□ -0.33
TRIM28-215ENST00000601150 OR1L8Q8NGR8 309 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms