RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 USMG5Q96IX5 58 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 COA4Q9NYJ1 87 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 KLK9Q9UKQ9 250 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 ZNF257Q9Y2Q1 563 aa12.5□□□□□ -0.41
LSM4-206ENST00000600289 DYNC2H1Q8NCM8 4307 aaKnown RBP12.5□□□□□ -0.41
LSM4-206ENST00000600289 NOTCH3Q9UM47 2321 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 TRBV9A0A0B4J1U6 114 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 A0A1B0GW64 132 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 ANKRD20A5PA0PJZ0 165 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 FABP12A6NFH5 140 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 LINC01619G3V211 115 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 MPPED1O15442 326 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 HSPB1P04792 205 aaKnown RBP12.49□□□□□ -0.41
LSM4-206ENST00000600289 AKAIN1P0CW23 69 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 LPAR6P43657 344 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 ERVK-16P61578 105 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 THOC7Q6I9Y2 204 aaKnown RBP12.49□□□□□ -0.41
LSM4-206ENST00000600289 DMBX1Q8NFW5 382 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 OR5B12Q96R08 314 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 SRSF8Q9BRL6 282 aaKnown RBP12.49□□□□□ -0.41
LSM4-206ENST00000600289 HRASLSQ9HDD0 168 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 ZNF355PQ9NSJ1 428 aa12.49□□□□□ -0.41
LSM4-206ENST00000600289 C13orf42A0A1B0GVH6 325 aa12.48□□□□□ -0.41
LSM4-206ENST00000600289 FAM223BA6NKX1 122 aa12.48□□□□□ -0.41
LSM4-206ENST00000600289 E7EUB6 86 aa12.48□□□□□ -0.41
LSM4-206ENST00000600289 CRYGCP07315 174 aa12.48□□□□□ -0.41
LSM4-206ENST00000600289 SURF2Q15527 256 aaPredicted RBP12.48□□□□□ -0.41
LSM4-206ENST00000600289 FAM223AQ8IWN6 122 aa12.48□□□□□ -0.41
LSM4-206ENST00000600289 ZFAND1Q8TCF1 268 aa12.48□□□□□ -0.41
LSM4-206ENST00000600289 DPF1Q92782 380 aa12.48□□□□□ -0.41
LSM4-206ENST00000600289 MRGPRFQ96AM1 343 aa12.48□□□□□ -0.41
LSM4-206ENST00000600289 ALX4Q9H161 411 aaPredicted RBP12.48□□□□□ -0.41
LSM4-206ENST00000600289 SLC2A8Q9NY64 477 aa12.48□□□□□ -0.41
LSM4-206ENST00000600289 NDUFA13Q9P0J0 144 aa12.48□□□□□ -0.41
LSM4-206ENST00000600289 V9GYH0 126 aa12.48□□□□□ -0.41
LSM4-206ENST00000600289 IGHV4OR15-8A0A075B7B6 117 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 A0A087WW49 117 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 CGB1A6NKQ9 187 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 DISC1C4P0D8 188 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 H0Y980 276 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 IGHV3-11P01762 117 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 CTSDP07339 412 aaPredicted RBP12.47□□□□□ -0.41
LSM4-206ENST00000600289 APELAP0DMC3 54 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 PGAM2P15259 253 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 RPA2P15927 270 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 S100A5P33763 92 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 PPP5CP53041 499 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 RAB25P57735 213 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 OR2B8PP59922 312 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 ZNF45Q02386 682 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 C9orf66Q5T8R8 295 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 C11orf87Q6NUJ2 197 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 ZNF343Q6P1L6 599 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 CCDC190Q86UF4 302 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 OR4C16Q8NGL9 310 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 MRAPQ8TCY5 172 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 RANGRFQ9HD47 186 aaPredicted RBP12.47□□□□□ -0.41
LSM4-206ENST00000600289 SACSQ9NZJ4 4579 aa12.47□□□□□ -0.41
LSM4-206ENST00000600289 TRAV3A0A0B4J244 114 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 HMX3A6NHT5 357 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 B3GALNT1O75752 331 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 CTRB1P17538 263 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 PSMB6P28072 239 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 PIGPP57054 158 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 SCGB2B2Q4G0G5 96 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 FAM209BQ5JX69 171 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 CTRB2Q6GPI1 263 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 HSD17B13Q7Z5P4 300 aaPredicted RBP12.46□□□□□ -0.41
LSM4-206ENST00000600289 CCDC71LQ8N9Z2 235 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 NECAP1Q8NC96 275 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 OR13C8Q8NGS7 320 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 SEC22AQ96IW7 307 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 FYTTD1Q96QD9 318 aaKnown RBP12.46□□□□□ -0.41
LSM4-206ENST00000600289 TSC22D3Q99576 134 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 PRRT1Q99946 306 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 COMMD5Q9GZQ3 224 aa12.46□□□□□ -0.41
LSM4-206ENST00000600289 AURKAIP1Q9NWT8 199 aaPredicted RBP12.46□□□□□ -0.41
LSM4-206ENST00000600289 ZMAT5Q9UDW3 170 aaKnown RBP12.46□□□□□ -0.41
LSM4-206ENST00000600289 IGLC7A0M8Q6 106 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 RBMXL2O75526 392 aaKnown RBP12.45□□□□□ -0.42
LSM4-206ENST00000600289 DHFRP00374 187 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 KRASP01116 189 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 IGKV1-39P01597 117 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 IGKV1D-39P04432 117 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 G6PCP35575 357 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 ETV6P41212 452 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 INSL3P51460 131 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 RHOGP84095 191 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 ZNF79Q15937 498 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 FAAP20Q6NZ36 180 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 MARCH1Q8TCQ1 289 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 DEDD2Q8WXF8 326 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 TRIM63Q969Q1 353 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 THAP7Q9BT49 309 aaPredicted RBP12.45□□□□□ -0.42
LSM4-206ENST00000600289 QTRT1Q9BXR0 403 aaKnown RBP12.45□□□□□ -0.42
LSM4-206ENST00000600289 AKIP1Q9NQ31 210 aa12.45□□□□□ -0.42
LSM4-206ENST00000600289 DPPA5A6NC42 116 aa12.44□□□□□ -0.42
LSM4-206ENST00000600289 SEC14L6B5MCN3 397 aa12.44□□□□□ -0.42
LSM4-206ENST00000600289 OVOL1O14753 267 aa12.44□□□□□ -0.42
LSM4-206ENST00000600289 MYOD1P15172 320 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms