RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 HSD17B13Q7Z5P4 300 aaPredicted RBP10.9□□□□□ -0.66
LIG1-218ENST00000599322 TSC22D3Q99576 134 aa10.9□□□□□ -0.66
LIG1-218ENST00000599322 SRSF8Q9BRL6 282 aaKnown RBP10.9□□□□□ -0.66
LIG1-218ENST00000599322 TMEM140Q9NV12 185 aa10.9□□□□□ -0.66
LIG1-218ENST00000599322 FKBP11Q9NYL4 201 aa10.9□□□□□ -0.66
LIG1-218ENST00000599322 PEMTQ9UBM1 199 aa10.9□□□□□ -0.66
LIG1-218ENST00000599322 SCOCQ9UIL1 159 aa10.9□□□□□ -0.66
LIG1-218ENST00000599322 COL7A1Q02388 2944 aa10.9□□□□□ -0.66
LIG1-218ENST00000599322 UPK2O00526 184 aa10.89□□□□□ -0.67
LIG1-218ENST00000599322 ATG12O94817 140 aa10.89□□□□□ -0.67
LIG1-218ENST00000599322 S1PR2O95136 353 aa10.89□□□□□ -0.67
LIG1-218ENST00000599322 FGF2P09038 288 aa10.89□□□□□ -0.67
LIG1-218ENST00000599322 ZNF735P0CB33 412 aa10.89□□□□□ -0.67
LIG1-218ENST00000599322 UCP3P55916 312 aa10.89□□□□□ -0.67
LIG1-218ENST00000599322 BRWD1-AS2P59051 145 aa10.89□□□□□ -0.67
LIG1-218ENST00000599322 TAS2R19P59542 299 aa10.89□□□□□ -0.67
LIG1-218ENST00000599322 EXOSC2Q13868 293 aaKnown RBP10.89□□□□□ -0.67
LIG1-218ENST00000599322 ARRDC1Q8N5I2 433 aa10.89□□□□□ -0.67
LIG1-218ENST00000599322 PRR25Q96S07 402 aa10.89□□□□□ -0.67
LIG1-218ENST00000599322 AKIP1Q9NQ31 210 aa10.89□□□□□ -0.67
LIG1-218ENST00000599322 FBXL7Q9UJT9 491 aa10.89□□□□□ -0.67
LIG1-218ENST00000599322 CCDC160A6NGH7 325 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 MARCH11A6NNE9 402 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 OR2J3O76001 311 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 KRASP01116 189 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 PRH1P02810 166 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 SERPINE2P07093 398 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 IL6RP08887 468 aaPredicted RBP10.88□□□□□ -0.67
LIG1-218ENST00000599322 TRAPPC2P0DI81 140 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 TRAPPC2BP0DI82 140 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 PSMB6P28072 239 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 SSBP1Q04837 148 aaKnown RBP10.88□□□□□ -0.67
LIG1-218ENST00000599322 C15orf32Q32M92 178 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 OR1L8Q8NGR8 309 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 OR52I2Q8NH67 350 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 ZFAND1Q8TCF1 268 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 EEF1AKMT3Q96AZ1 226 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 ZNF486Q96H40 463 aaPredicted RBP10.88□□□□□ -0.67
LIG1-218ENST00000599322 DIRAS2Q96HU8 199 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 QTRT1Q9BXR0 403 aaKnown RBP10.88□□□□□ -0.67
LIG1-218ENST00000599322 C6orf62Q9GZU0 229 aaPredicted RBP10.88□□□□□ -0.67
LIG1-218ENST00000599322 FXYD6Q9H0Q3 95 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 FAM212BQ9NTI7 297 aaPredicted RBP10.88□□□□□ -0.67
LIG1-218ENST00000599322 CCDC59Q9P031 241 aaKnown RBP10.88□□□□□ -0.67
LIG1-218ENST00000599322 MTFP1Q9UDX5 166 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 PRNDQ9UKY0 176 aa10.88□□□□□ -0.67
LIG1-218ENST00000599322 TRBV9A0A0B4J1U6 114 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 TEX22C9J3V5 150 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 H0Y980 276 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 GABARAPH6UMI1 98 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 M0QYG6 137 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 RAB3DO95716 219 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 RPA2P15927 270 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 SYNJ2BPP57105 145 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 IL18Q14116 193 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 MEF2DQ14814 521 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 SPCS2Q15005 226 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 TBC1D26Q86UD7 250 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 CCDC71LQ8N9Z2 235 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 TMEM229BQ8NBD8 167 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 OR9G4Q8NGQ1 327 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 CXorf58Q96LI9 332 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 TMEM56Q96MV1 263 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 HINT2Q9BX68 163 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 KLK11Q9UBX7 282 aa10.87□□□□□ -0.67
LIG1-218ENST00000599322 DISC1C4P0D8 188 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 CTDSP2O14595 271 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 GGCTO75223 188 aaKnown RBP10.86□□□□□ -0.67
LIG1-218ENST00000599322 RBMXL2O75526 392 aaKnown RBP10.86□□□□□ -0.67
LIG1-218ENST00000599322 CD3DP04234 171 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 CRYGCP07315 174 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 MECP2P51608 486 aaKnown RBP10.86□□□□□ -0.67
LIG1-218ENST00000599322 DEFA5Q01523 94 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 KLF5Q13887 457 aaPredicted RBP10.86□□□□□ -0.67
LIG1-218ENST00000599322 SCGB2B2Q4G0G5 96 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 STEAP1BQ6NZ63 245 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 H2BFWTQ7Z2G1 175 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 CADM3Q8N126 398 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 OR1L6Q8NGR2 347 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 OR4A16Q8NH70 328 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 ABHD1Q96SE0 405 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 B9D2Q9BPU9 175 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 COPZ2Q9P299 210 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 RSL24D1Q9UHA3 163 aaKnown RBP10.86□□□□□ -0.67
LIG1-218ENST00000599322 OR51B2Q9Y5P1 312 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 SMAD5-AS1Q9Y6J3 95 aa10.86□□□□□ -0.67
LIG1-218ENST00000599322 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.85□□□□□ -0.67
LIG1-218ENST00000599322 TRBV7-1A0A0A6YYK4 115 aa10.85□□□□□ -0.67
LIG1-218ENST00000599322 NHLRC4P0CG21 123 aaPredicted RBP10.85□□□□□ -0.67
LIG1-218ENST00000599322 GP9P14770 177 aa10.85□□□□□ -0.67
LIG1-218ENST00000599322 AREGP15514 252 aa10.85□□□□□ -0.67
LIG1-218ENST00000599322 CTRB1P17538 263 aa10.85□□□□□ -0.67
LIG1-218ENST00000599322 G6PCP35575 357 aa10.85□□□□□ -0.67
LIG1-218ENST00000599322 OR2B8PP59922 312 aa10.85□□□□□ -0.67
LIG1-218ENST00000599322 FAM106AQ4KMX7 169 aa10.85□□□□□ -0.67
LIG1-218ENST00000599322 CTRB2Q6GPI1 263 aa10.85□□□□□ -0.67
LIG1-218ENST00000599322 LAX1Q8IWV1 398 aa10.85□□□□□ -0.67
LIG1-218ENST00000599322 TERB2Q8NHR7 220 aa10.85□□□□□ -0.67
LIG1-218ENST00000599322 C14orf166Q9Y224 244 aaKnown RBP10.85□□□□□ -0.67
LIG1-218ENST00000599322 RYR3Q15413 4870 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms