RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 CMYA5Q8N3K9 4069 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 ATG12O94817 140 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 IGKV1-5P01602 117 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 IGLV1-40P01703 118 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 OR9G9P0C7N8 305 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 P0C879 139 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 SLC6A1P30531 599 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 FOXE3Q13461 319 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 ASPHD1Q5U4P2 390 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 HIST2H2BDQ6DRA6 164 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 TEX38Q6PEX7 206 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 UNQ5815/PRO19632Q6UWF5 114 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 RNF152Q8N8N0 203 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 TMEM68Q96MH6 324 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 TMEM56Q96MV1 263 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 CITED2Q99967 270 aaPredicted RBP14.22□□□□□ -0.13
LIG1-216ENST00000598938 FLVCR2Q9UPI3 526 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 TMEM56-RWDD3S4R434 201 aa14.22□□□□□ -0.13
LIG1-216ENST00000598938 MSGN1A6NI15 193 aa14.21□□□□□ -0.13
LIG1-216ENST00000598938 ELANEP08246 267 aa14.21□□□□□ -0.13
LIG1-216ENST00000598938 MYOD1P15172 320 aa14.21□□□□□ -0.13
LIG1-216ENST00000598938 PSMB8P28062 276 aa14.21□□□□□ -0.13
LIG1-216ENST00000598938 RPL27AP46776 148 aaKnown RBP14.21□□□□□ -0.13
LIG1-216ENST00000598938 UBE2MP61081 183 aaKnown RBP14.21□□□□□ -0.13
LIG1-216ENST00000598938 H2BFWTQ7Z2G1 175 aa14.21□□□□□ -0.13
LIG1-216ENST00000598938 SELENOHQ8IZQ5 122 aaKnown RBP14.21□□□□□ -0.13
LIG1-216ENST00000598938 RBPMSQ93062 196 aaKnown RBP14.21□□□□□ -0.13
LIG1-216ENST00000598938 IL22RA2Q969J5 263 aa14.21□□□□□ -0.13
LIG1-216ENST00000598938 TSC22D3Q99576 134 aa14.21□□□□□ -0.13
LIG1-216ENST00000598938 SPIN2AQ99865 258 aa14.21□□□□□ -0.13
LIG1-216ENST00000598938 SPIN2BQ9BPZ2 258 aa14.21□□□□□ -0.13
LIG1-216ENST00000598938 FOXA2Q9Y261 457 aaPredicted RBP14.21□□□□□ -0.13
LIG1-216ENST00000598938 A0A1B0GW64 132 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 A0A1W2PN81 502 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 CGB1A6NKQ9 187 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 TEX22C9J3V5 150 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 E7EUB6 86 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 SOX15O60248 233 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 ANXA3P12429 323 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 CHRNA7P36544 502 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 PPP1R1AQ13522 171 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 MZT2BQ6NZ67 158 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 OR5M8Q8NGP6 311 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 PHB2Q99623 299 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 C20orf85Q9H1P6 137 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 TNCP24821 2201 aa14.2□□□□□ -0.14
LIG1-216ENST00000598938 A0A0G2JRQ6 117 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 TCRBV4S1A1TA0A5B7 111 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 C15orf61A6NNL5 157 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 ADARB2-AS1A8MUL3 147 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 SNAPC5O75971 98 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 OPN1MWP04001 364 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 TCRBP04435 133 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 OPN1MW2P0DN77 364 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 OPN1MW3P0DN78 364 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 AKR1C2P52895 323 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 OR2B8PP59922 312 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 TMEM268Q5VZI3 342 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 NDUFA11Q86Y39 141 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 ZNF695Q8IW36 515 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 COMMD5Q9GZQ3 224 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 TMEM14BQ9NUH8 114 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 PRR13Q9NZ81 148 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 PRNDQ9UKY0 176 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 NSG2Q9Y328 171 aa14.19□□□□□ -0.14
LIG1-216ENST00000598938 TSSC4Q9Y5U2 329 aaPredicted RBP14.19□□□□□ -0.14
LIG1-216ENST00000598938 TEX50A0A1B0GTY4 177 aa14.18□□□□□ -0.14
LIG1-216ENST00000598938 FAM240BA0A1B0GVZ2 78 aa14.18□□□□□ -0.14
LIG1-216ENST00000598938 SFT2D2O95562 160 aa14.18□□□□□ -0.14
LIG1-216ENST00000598938 VAMP1P23763 118 aa14.18□□□□□ -0.14
LIG1-216ENST00000598938 SRPXP78539 464 aa14.18□□□□□ -0.14
LIG1-216ENST00000598938 IZUMO4Q1ZYL8 232 aa14.18□□□□□ -0.14
LIG1-216ENST00000598938 CXorf66Q5JRM2 361 aaPredicted RBP14.18□□□□□ -0.14
LIG1-216ENST00000598938 LCNL1Q6ZST4 164 aa14.18□□□□□ -0.14
LIG1-216ENST00000598938 FAM219AQ8IW50 185 aa14.18□□□□□ -0.14
LIG1-216ENST00000598938 FAM110DQ8TAY7 271 aaPredicted RBP14.18□□□□□ -0.14
LIG1-216ENST00000598938 MYOZ3Q8TDC0 251 aa14.18□□□□□ -0.14
LIG1-216ENST00000598938 RRNAD1Q96FB5 475 aaKnown RBP14.18□□□□□ -0.14
LIG1-216ENST00000598938 ZFP57Q9NU63 452 aa14.18□□□□□ -0.14
LIG1-216ENST00000598938 FKBP11Q9NYL4 201 aa14.18□□□□□ -0.14
LIG1-216ENST00000598938 HMX3A6NHT5 357 aa14.17□□□□□ -0.14
LIG1-216ENST00000598938 DBX1A6NMT0 343 aa14.17□□□□□ -0.14
LIG1-216ENST00000598938 RPLP1P05386 114 aaKnown RBP14.17□□□□□ -0.14
LIG1-216ENST00000598938 APELAP0DMC3 54 aa14.17□□□□□ -0.14
LIG1-216ENST00000598938 ANXA7P20073 488 aaKnown RBP14.17□□□□□ -0.14
LIG1-216ENST00000598938 LGI3Q8N145 548 aa14.17□□□□□ -0.14
LIG1-216ENST00000598938 SLC35G3Q8N808 338 aa14.17□□□□□ -0.14
LIG1-216ENST00000598938 OR5T1Q8NG75 326 aa14.17□□□□□ -0.14
LIG1-216ENST00000598938 OR1L8Q8NGR8 309 aa14.17□□□□□ -0.14
LIG1-216ENST00000598938 OR4A16Q8NH70 328 aa14.17□□□□□ -0.14
LIG1-216ENST00000598938 LSM10Q969L4 123 aaKnown RBP14.17□□□□□ -0.14
LIG1-216ENST00000598938 FYTTD1Q96QD9 318 aaKnown RBP14.17□□□□□ -0.14
LIG1-216ENST00000598938 SRSF8Q9BRL6 282 aaKnown RBP14.17□□□□□ -0.14
LIG1-216ENST00000598938 QTRT1Q9BXR0 403 aaKnown RBP14.17□□□□□ -0.14
LIG1-216ENST00000598938 ALX4Q9H161 411 aaPredicted RBP14.17□□□□□ -0.14
LIG1-216ENST00000598938 KLK15Q9H2R5 256 aa14.17□□□□□ -0.14
LIG1-216ENST00000598938 OR51B2Q9Y5P1 312 aa14.17□□□□□ -0.14
LIG1-216ENST00000598938 TET2Q6N021 2002 aaPredicted RBP14.16□□□□□ -0.14
LIG1-216ENST00000598938 A0A0B4J293 547 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 A0A0B4J2A0 478 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms