RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 C9orf66Q5T8R8 295 aa15.08■□□□□ 0
SS18-209ENST00000578595 MRAPQ8TCY5 172 aa15.08■□□□□ 0
SS18-209ENST00000578595 RBM38Q9H0Z9 239 aaKnown RBP15.08■□□□□ 0
SS18-209ENST00000578595 TRAV3A0A0B4J244 114 aa15.07■□□□□ 0
SS18-209ENST00000578595 UPK2O00526 184 aa15.07■□□□□ 0
SS18-209ENST00000578595 OVOL1O14753 267 aa15.07■□□□□ 0
SS18-209ENST00000578595 CTDSPLO15194 276 aa15.07■□□□□ 0
SS18-209ENST00000578595 CD74P04233 296 aa15.07■□□□□ 0
SS18-209ENST00000578595 HSPB1P04792 205 aaKnown RBP15.07■□□□□ 0
SS18-209ENST00000578595 REG1AP05451 166 aa15.07■□□□□ 0
SS18-209ENST00000578595 RHOGP84095 191 aa15.07■□□□□ 0
SS18-209ENST00000578595 REC114Q7Z4M0 266 aa15.07■□□□□ 0
SS18-209ENST00000578595 DCUN1D4Q92564 292 aa15.07■□□□□ 0
SS18-209ENST00000578595 HINT2Q9BX68 163 aa15.07■□□□□ 0
SS18-209ENST00000578595 AURKAIP1Q9NWT8 199 aaPredicted RBP15.07■□□□□ 0
SS18-209ENST00000578595 COPZ2Q9P299 210 aa15.07■□□□□ 0
SS18-209ENST00000578595 TEX22C9J3V5 150 aa15.06■□□□□ 0
SS18-209ENST00000578595 SNAPC5O75971 98 aa15.06■□□□□ 0
SS18-209ENST00000578595 SERPINE2P07093 398 aa15.06■□□□□ 0
SS18-209ENST00000578595 IL6RP08887 468 aaPredicted RBP15.06■□□□□ 0
SS18-209ENST00000578595 DEFA4P12838 97 aa15.06■□□□□ 0
SS18-209ENST00000578595 PIGPP57054 158 aa15.06■□□□□ 0
SS18-209ENST00000578595 POU2AF1Q16633 256 aa15.06■□□□□ 0
SS18-209ENST00000578595 PYDC2Q56P42 97 aa15.06■□□□□ 0
SS18-209ENST00000578595 C19orf35Q6ZS72 473 aa15.06■□□□□ 0
SS18-209ENST00000578595 LHFPL1Q86WI0 220 aa15.06■□□□□ 0
SS18-209ENST00000578595 CCDC71LQ8N9Z2 235 aa15.06■□□□□ 0
SS18-209ENST00000578595 OR4C16Q8NGL9 310 aa15.06■□□□□ 0
SS18-209ENST00000578595 ZFAND1Q8TCF1 268 aa15.06■□□□□ 0
SS18-209ENST00000578595 MARCH1Q8TCQ1 289 aa15.06■□□□□ 0
SS18-209ENST00000578595 USMG5Q96IX5 58 aa15.06■□□□□ 0
SS18-209ENST00000578595 NXF2Q9GZY0 626 aaKnown RBP15.06■□□□□ 0
SS18-209ENST00000578595 C14orf166Q9Y224 244 aaKnown RBP15.06■□□□□ 0
SS18-209ENST00000578595 ZNF257Q9Y2Q1 563 aa15.06■□□□□ 0
SS18-209ENST00000578595 SORL1Q92673 2214 aa15.05■□□□□ 0
SS18-209ENST00000578595 OR2J3O76001 311 aa15.05■□□□□ -0
SS18-209ENST00000578595 DHFRP00374 187 aa15.05■□□□□ -0
SS18-209ENST00000578595 ZNF735P0CB33 412 aa15.05■□□□□ -0
SS18-209ENST00000578595 AREGP15514 252 aa15.05■□□□□ -0
SS18-209ENST00000578595 OR2B8PP59922 312 aa15.05■□□□□ -0
SS18-209ENST00000578595 EXOSC2Q13868 293 aaKnown RBP15.05■□□□□ -0
SS18-209ENST00000578595 ZNF585BQ52M93 769 aa15.05■□□□□ -0
SS18-209ENST00000578595 TTC9CQ8N5M4 171 aa15.05■□□□□ -0
SS18-209ENST00000578595 OR13C8Q8NGS7 320 aa15.05■□□□□ -0
SS18-209ENST00000578595 TERB2Q8NHR7 220 aa15.05■□□□□ -0
SS18-209ENST00000578595 DLX4Q92988 240 aaPredicted RBP15.05■□□□□ -0
SS18-209ENST00000578595 ZNF486Q96H40 463 aaPredicted RBP15.05■□□□□ -0
SS18-209ENST00000578595 RANGRFQ9HD47 186 aaPredicted RBP15.05■□□□□ -0
SS18-209ENST00000578595 AKIP1Q9NQ31 210 aa15.05■□□□□ -0
SS18-209ENST00000578595 MCUBQ9NWR8 336 aa15.05■□□□□ -0
SS18-209ENST00000578595 NSG2Q9Y328 171 aa15.05■□□□□ -0
SS18-209ENST00000578595 FAM223BA6NKX1 122 aa15.04■□□□□ -0
SS18-209ENST00000578595 E7EUB6 86 aa15.04■□□□□ -0
SS18-209ENST00000578595 ZNF701M0R085 212 aaPredicted RBP15.04■□□□□ -0
SS18-209ENST00000578595 SAP30O75446 220 aa15.04■□□□□ -0
SS18-209ENST00000578595 RBMXL2O75526 392 aaKnown RBP15.04■□□□□ -0
SS18-209ENST00000578595 ATP5G2Q06055 141 aa15.04■□□□□ -0
SS18-209ENST00000578595 FAM223AQ8IWN6 122 aa15.04■□□□□ -0
SS18-209ENST00000578595 QTRT1Q9BXR0 403 aaKnown RBP15.04■□□□□ -0
SS18-209ENST00000578595 NPIPB5A8MRT5 1133 aa15.03■□□□□ -0
SS18-209ENST00000578595 GSTZ1O43708 216 aaPredicted RBP15.03■□□□□ -0
SS18-209ENST00000578595 ZP3P21754 424 aa15.03■□□□□ -0
SS18-209ENST00000578595 PSMB6P28072 239 aa15.03■□□□□ -0
SS18-209ENST00000578595 MECP2P51608 486 aaKnown RBP15.03■□□□□ -0
SS18-209ENST00000578595 AKR1C2P52895 323 aa15.03■□□□□ -0
SS18-209ENST00000578595 KRTAP10-11P60412 298 aa15.03■□□□□ -0
SS18-209ENST00000578595 RND3P61587 244 aa15.03■□□□□ -0
SS18-209ENST00000578595 ZNF45Q02386 682 aa15.03■□□□□ -0
SS18-209ENST00000578595 TRIM16LQ309B1 348 aa15.03■□□□□ -0
SS18-209ENST00000578595 H2BFWTQ7Z2G1 175 aa15.03■□□□□ -0
SS18-209ENST00000578595 RNASE11Q8TAA1 199 aaKnown RBP15.03■□□□□ -0
SS18-209ENST00000578595 MRGPRFQ96AM1 343 aa15.03■□□□□ -0
SS18-209ENST00000578595 PEF1Q9UBV8 284 aaKnown RBP15.03■□□□□ -0
SS18-209ENST00000578595 FBXL7Q9UJT9 491 aa15.03■□□□□ -0
SS18-209ENST00000578595 TGP01266 2768 aa15.03■□□□□ -0
SS18-209ENST00000578595 A0A1B0GW64 132 aa15.02■□□□□ -0
SS18-209ENST00000578595 H0Y980 276 aa15.02■□□□□ -0
SS18-209ENST00000578595 ECI1P42126 302 aa15.02■□□□□ -0
SS18-209ENST00000578595 C15orf32Q32M92 178 aa15.02■□□□□ -0
SS18-209ENST00000578595 NECAP1Q8NC96 275 aa15.02■□□□□ -0
SS18-209ENST00000578595 OR1L8Q8NGR8 309 aa15.02■□□□□ -0
SS18-209ENST00000578595 TSC22D3Q99576 134 aa15.02■□□□□ -0
SS18-209ENST00000578595 PRRT1Q99946 306 aa15.02■□□□□ -0
SS18-209ENST00000578595 THAP7Q9BT49 309 aaPredicted RBP15.02■□□□□ -0
SS18-209ENST00000578595 ZMAT5Q9UDW3 170 aaKnown RBP15.02■□□□□ -0
SS18-209ENST00000578595 OR51B2Q9Y5P1 312 aa15.02■□□□□ -0
SS18-209ENST00000578595 TEX13DA0A0J9YY54 714 aaPredicted RBP15.01□□□□□ -0.01
SS18-209ENST00000578595 C3orf85A0A1B0GTC6 90 aa15.01□□□□□ -0.01
SS18-209ENST00000578595 ANKRD20A5PA0PJZ0 165 aa15.01□□□□□ -0.01
SS18-209ENST00000578595 BRI3O95415 125 aa15.01□□□□□ -0.01
SS18-209ENST00000578595 LY86O95711 162 aa15.01□□□□□ -0.01
SS18-209ENST00000578595 TRBV12-3P01733 135 aa15.01□□□□□ -0.01
SS18-209ENST00000578595 CTSDP07339 412 aaPredicted RBP15.01□□□□□ -0.01
SS18-209ENST00000578595 TRAPPC2P0DI81 140 aa15.01□□□□□ -0.01
SS18-209ENST00000578595 TRAPPC2BP0DI82 140 aa15.01□□□□□ -0.01
SS18-209ENST00000578595 RPEL1Q2QD12 228 aa15.01□□□□□ -0.01
SS18-209ENST00000578595 SPANXN2Q5MJ10 180 aa15.01□□□□□ -0.01
SS18-209ENST00000578595 OR10W1Q8NGF6 305 aa15.01□□□□□ -0.01
SS18-209ENST00000578595 OR51S1Q8NGJ8 323 aa15.01□□□□□ -0.01
SS18-209ENST00000578595 OR4A16Q8NH70 328 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms