RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SLC25A22Q9H936 323 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 UBTD1Q9HAC8 227 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 EML6Q6ZMW3 1958 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 H3BRM9 83 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 K7ESF4 209 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 RPEL1Q2QD12 228 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 OR8B3Q8NGG8 313 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 OR2T6Q8NHC8 308 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.12□□□□□ -0.95
CLK3-226ENST00000569406 TRIOBPQ9H2D6 2365 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 PI4KAP42356 2102 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 FAM181BA6NEQ2 426 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 PRR33A8MZF0 331 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 IL11P20809 199 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 F2RP25116 425 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 RHOBP62745 196 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 NEIL1Q96FI4 390 aaPredicted RBP9.12□□□□□ -0.95
CLK3-226ENST00000569406 C20orf78Q9BR46 151 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 ZNF257Q9Y2Q1 563 aa9.12□□□□□ -0.95
CLK3-226ENST00000569406 DIDO1Q9BTC0 2240 aaKnown RBP9.11□□□□□ -0.95
CLK3-226ENST00000569406 MLNRO43193 412 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 INSL3P51460 131 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 OR51T1Q8NGJ9 327 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 ARPC1AQ92747 370 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 OR1A1Q9P1Q5 309 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 MED12LQ86YW9 2145 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 COL27A1Q8IZC6 1860 aaPredicted RBP9.11□□□□□ -0.95
CLK3-226ENST00000569406 CEP250Q9BV73 2442 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 A0A1W2PP11 408 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 CTLA4P16410 223 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 HERV-K104P61576 105 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 C1orf140Q5VVS0 124 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 ACSM6Q6P461 480 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 OR10G8Q8NGN5 311 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 RNF138Q8WVD3 245 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 MBD3L1Q8WWY6 194 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 OR8B2Q96RD0 313 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 MCRIP2Q9BUT9 160 aaKnown RBP9.11□□□□□ -0.95
CLK3-226ENST00000569406 GVINP1Q7Z2Y8 2422 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 A0A1W2PQD3 144 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 TMEM189A5PLL7 270 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 CEACAM4O75871 244 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 RNASEKQ6P5S7 137 aaKnown RBP9.11□□□□□ -0.95
CLK3-226ENST00000569406 OTOSQ8NHW6 89 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 NAA60Q9H7X0 242 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 KCNS2Q9ULS6 477 aa9.11□□□□□ -0.95
CLK3-226ENST00000569406 TIMM8BQ9Y5J9 83 aaPredicted RBP9.11□□□□□ -0.95
CLK3-226ENST00000569406 DYSFO75923 2080 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 LOC102723996A0A087X1L8 192 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 IGHV3-20A0A0C4DH32 117 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 LOC102725191A0A1B0GVB3 256 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 C19orf67A6NJJ6 358 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 DEGS1O15121 323 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 TMEM187Q14656 261 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 TPRX1Q8N7U7 411 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 ZNF114Q8NC26 417 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 ZBTB34Q8NCN2 500 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 NFAM1Q8NET5 270 aaPredicted RBP9.1□□□□□ -0.95
CLK3-226ENST00000569406 DDB2Q92466 427 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 TRAV38-1A0A0B4J264 116 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 SRSF10O75494 262 aaKnown RBP9.1□□□□□ -0.95
CLK3-226ENST00000569406 NDUFB4O95168 129 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 HBZP02008 142 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 HLA-DOBP13765 273 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 PAX9P55771 341 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 TIGITQ495A1 244 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 LIAT1Q6ZQX7 453 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 SYT8Q8NBV8 401 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 KLRF1Q9NZS2 232 aa9.1□□□□□ -0.95
CLK3-226ENST00000569406 IGLV1-36A0A0B4J1U3 117 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 DXOO77932 396 aaKnown RBP9.09□□□□□ -0.95
CLK3-226ENST00000569406 CRYBB3P26998 211 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 SRD5A2P31213 254 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 VDAC2P45880 294 aaPredicted RBP9.09□□□□□ -0.95
CLK3-226ENST00000569406 PRSS12P56730 875 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 TNXAQ16473 311 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 SLC23A3Q6PIS1 610 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 KIR3DL3Q8N743 410 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 C8orf44Q96CB5 159 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 SPANXB1Q9NS25 103 aaPredicted RBP9.09□□□□□ -0.95
CLK3-226ENST00000569406 IL36GQ9NZH8 169 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 TCTAP57738 103 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 FOXE3Q13461 319 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 C1orf100Q5SVJ3 147 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 OR51E1Q8TCB6 317 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 MSI2Q96DH6 328 aaKnown RBP9.09□□□□□ -0.95
CLK3-226ENST00000569406 IGLV3-12A0A075B6K2 115 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 GAGE12JA6NER3 117 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 C11orf94C9JXX5 98 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 EFNA2O43921 213 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 GAGE7O76087 117 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 GAGE12FP0CL80 117 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 GAGE12GP0CL81 117 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 GAGE12IP0CL82 117 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 IGFBP4P22692 258 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 GAGE4Q13068 117 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 OR10J3Q5JRS4 329 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 SAMD5Q5TGI4 173 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 LRTM2Q8N967 370 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms