RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CRYABP02511 175 aaKnown RBP12.4□□□□□ -0.42
CUX1-215ENST00000556210 IGKV1D-39P04432 117 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 ADH4P08319 380 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 TPPP2P59282 170 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 ZNF585BQ52M93 769 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 HCP5Q6MZN7 132 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 RPP25LQ8N5L8 163 aaKnown RBP12.4□□□□□ -0.42
CUX1-215ENST00000556210 DCAF16Q9NXF7 216 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 TNFRSF1AP19438 455 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 ATP5G3P48201 142 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 PRR31Q5SQ13 230 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 SIGLECL1Q8N7X8 197 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 NUP210LQ5VU65 1888 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 NDUFB3O43676 98 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 SUMO1P63165 101 aaKnown RBP12.4□□□□□ -0.42
CUX1-215ENST00000556210 ERHP84090 104 aaKnown RBP12.4□□□□□ -0.42
CUX1-215ENST00000556210 LBHQ53QV2 105 aaPredicted RBP12.4□□□□□ -0.42
CUX1-215ENST00000556210 LSM10Q969L4 123 aaKnown RBP12.4□□□□□ -0.42
CUX1-215ENST00000556210 TMEM68Q96MH6 324 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 NDUFAF3Q9BU61 184 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 PRDM13Q9H4Q3 707 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 MANBALQ9NQG1 85 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 WDFY3Q8IZQ1 3526 aa12.4□□□□□ -0.42
CUX1-215ENST00000556210 AHRRA9YTQ3 701 aa12.4□□□□□ -0.43
CUX1-215ENST00000556210 ARL14EPLP0DKL9 152 aa12.4□□□□□ -0.43
CUX1-215ENST00000556210 CHRNB4P30926 498 aa12.4□□□□□ -0.43
CUX1-215ENST00000556210 LRRC75BQ2VPJ9 315 aa12.4□□□□□ -0.43
CUX1-215ENST00000556210 CYP2G1PQ6ZSU1 146 aa12.4□□□□□ -0.43
CUX1-215ENST00000556210 COQ2Q96H96 371 aa12.4□□□□□ -0.43
CUX1-215ENST00000556210 LOXL4Q96JB6 756 aa12.4□□□□□ -0.43
CUX1-215ENST00000556210 CBY1Q9Y3M2 126 aa12.4□□□□□ -0.43
CUX1-215ENST00000556210 CSPG4Q6UVK1 2322 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 CCL3L1P16619 93 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 PAX9P55771 341 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 FAM90A2PQ658T7 463 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 C22orf15Q8WYQ4 148 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 TCF19Q9Y242 345 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 LRP4O75096 1905 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 GRIFINA4D1Z8 144 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 IQCF6A8MYZ5 107 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 OR9G9P0C7N8 305 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 RPL23P62829 140 aaKnown RBP12.39□□□□□ -0.43
CUX1-215ENST00000556210 DUX4L9Q6RFH8 374 aaPredicted RBP12.39□□□□□ -0.43
CUX1-215ENST00000556210 C19orf67A6NJJ6 358 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 FCN1O00602 326 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 HPRT1P00492 218 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 OR4A8P0C604 315 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 TIGITQ495A1 244 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 CD177Q8N6Q3 437 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 VN1R17PQ8TDU5 208 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 NPCDR1Q9BY65 106 aa12.39□□□□□ -0.43
CUX1-215ENST00000556210 CEP192Q8TEP8 1941 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 TRBV24-1A0A075B6N3 115 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 TRAV34A0A0B4J273 112 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 hADV38S2A0JD32 116 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 C16orf97H3BN30 126 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 RRHO14718 337 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 CRISP2P16562 243 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 SLC25A10Q9UBX3 287 aaPredicted RBP12.38□□□□□ -0.43
CUX1-215ENST00000556210 NAGKQ9UJ70 344 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 LYNX1G3V0Z9 82 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 LYNX1P0DP58 116 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 PMCHP20382 165 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 ATP6V1FQ16864 119 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 ZNF664Q8N3J9 261 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 PSMG3Q9BT73 122 aaPredicted RBP12.38□□□□□ -0.43
CUX1-215ENST00000556210 ZNF586Q9NXT0 402 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 OR51B2Q9Y5P1 312 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 OR10J1P30954 320 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 SLC35E4Q6ICL7 350 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 MRPL54Q6P161 138 aaKnown RBP12.38□□□□□ -0.43
CUX1-215ENST00000556210 SLC24A4Q8NFF2 622 aa12.38□□□□□ -0.43
CUX1-215ENST00000556210 IFITM10A6NMD0 228 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 PCP4P48539 62 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 SPCS3P61009 180 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 UNQ6494/PRO21346Q6UXR6 183 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 OR5R1Q8NH85 324 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 NGBQ9NPG2 151 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 ZNF355PQ9NSJ1 428 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 ZNF835Q9Y2P0 537 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 COX7A2P2O60397 106 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 DLX1P56177 255 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 FXYD3Q14802 87 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 RAB29O14966 203 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 GZMBP10144 247 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 KIAA1644Q3SXP7 199 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 LRRC10Q5BKY1 277 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 Q6ZR03 302 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 ZBTB34Q8NCN2 500 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 OR10G8Q8NGN5 311 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 ABHD17AQ96GS6 310 aa12.37□□□□□ -0.43
CUX1-215ENST00000556210 MRPL37Q9BZE1 423 aaKnown RBP12.37□□□□□ -0.43
CUX1-215ENST00000556210 CAMPP49913 170 aa12.36□□□□□ -0.43
CUX1-215ENST00000556210 RBPJQ06330 500 aa12.36□□□□□ -0.43
CUX1-215ENST00000556210 TEPPQ6URK8 271 aa12.36□□□□□ -0.43
CUX1-215ENST00000556210 STARD4Q96DR4 205 aa12.36□□□□□ -0.43
CUX1-215ENST00000556210 DERL1Q9BUN8 251 aa12.36□□□□□ -0.43
CUX1-215ENST00000556210 MS4A5Q9H3V2 200 aa12.36□□□□□ -0.43
CUX1-215ENST00000556210 NUBP1P53384 320 aa12.36□□□□□ -0.43
CUX1-215ENST00000556210 OR5I1Q13606 314 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms