RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 IL18Q14116 193 aa12.12□□□□□ -0.47
CCDC78-216ENST00000544996 ZNF343Q6P1L6 599 aa12.12□□□□□ -0.47
CCDC78-216ENST00000544996 ZNF429Q86V71 674 aa12.12□□□□□ -0.47
CCDC78-216ENST00000544996 TMEM229BQ8NBD8 167 aa12.12□□□□□ -0.47
CCDC78-216ENST00000544996 NECAP1Q8NC96 275 aa12.12□□□□□ -0.47
CCDC78-216ENST00000544996 PEF1Q9UBV8 284 aaKnown RBP12.12□□□□□ -0.47
CCDC78-216ENST00000544996 TRBV9A0A0B4J1U6 114 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 MARCH11A6NNE9 402 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 K7EIL1 84 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 SAP30O75446 220 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 RAB3DO95716 219 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 KRASP01116 189 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 PRH1P02810 166 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 PGAM2P15259 253 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 RPA2P15927 270 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 ECI1P42126 302 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 DEFA5Q01523 94 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 DEFB121Q5J5C9 76 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 TBC1D26Q86UD7 250 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 MCFD2Q8NI22 146 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 SMIM4Q8WVI0 70 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 ELOVL1Q9BW60 279 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 SLIRPQ9GZT3 109 aaKnown RBP12.11□□□□□ -0.47
CCDC78-216ENST00000544996 AKIP1Q9NQ31 210 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 FAM212BQ9NTI7 297 aaPredicted RBP12.11□□□□□ -0.47
CCDC78-216ENST00000544996 CEPT1Q9Y6K0 416 aa12.11□□□□□ -0.47
CCDC78-216ENST00000544996 WI2-2373I1.2A0A1W2PRP0 233 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 E7EUB6 86 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 CTDSPLO15194 276 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 SNAPC5O75971 98 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 CD74P04233 296 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 DEFA4P12838 97 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 PSMB6P28072 239 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 ZNF45Q02386 682 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 DCTN2Q13561 401 aaKnown RBP12.1□□□□□ -0.47
CCDC78-216ENST00000544996 MEF2DQ14814 521 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 ZNF585BQ52M93 769 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 FAM209BQ5JX69 171 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 STEAP1BQ6NZ63 245 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 CADM3Q8N126 398 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 ZNF486Q96H40 463 aaPredicted RBP12.1□□□□□ -0.47
CCDC78-216ENST00000544996 OR4C12Q96R67 309 aa12.1□□□□□ -0.47
CCDC78-216ENST00000544996 SRSF8Q9BRL6 282 aaKnown RBP12.1□□□□□ -0.47
CCDC78-216ENST00000544996 TRAV3A0A0B4J244 114 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 RBMXL2O75526 392 aaKnown RBP12.09□□□□□ -0.47
CCDC78-216ENST00000544996 OR2J3O76001 311 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 CRYGCP07315 174 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 MYOD1P15172 320 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 AREGP15514 252 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 G6PCP35575 357 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 OR2B8PP59922 312 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 EXOSC2Q13868 293 aaKnown RBP12.09□□□□□ -0.47
CCDC78-216ENST00000544996 TATDN3Q17R31 274 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 C15orf32Q32M92 178 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 SCGB2B2Q4G0G5 96 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 THOC7Q6I9Y2 204 aaKnown RBP12.09□□□□□ -0.47
CCDC78-216ENST00000544996 ACSM6Q6P461 480 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 LHFPL1Q86WI0 220 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 TERB2Q8NHR7 220 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 ZFAND1Q8TCF1 268 aa12.09□□□□□ -0.47
CCDC78-216ENST00000544996 QTRT1Q9BXR0 403 aaKnown RBP12.09□□□□□ -0.47
CCDC78-216ENST00000544996 RSL24D1Q9UHA3 163 aaKnown RBP12.09□□□□□ -0.47
CCDC78-216ENST00000544996 A0A1B0GW64 132 aa12.08□□□□□ -0.48
CCDC78-216ENST00000544996 FABP12A6NFH5 140 aa12.08□□□□□ -0.48
CCDC78-216ENST00000544996 SERPINE2P07093 398 aa12.08□□□□□ -0.48
CCDC78-216ENST00000544996 TRAPPC2P0DI81 140 aa12.08□□□□□ -0.48
CCDC78-216ENST00000544996 TRAPPC2BP0DI82 140 aa12.08□□□□□ -0.48
CCDC78-216ENST00000544996 HIST1H1BP16401 226 aaKnown RBP12.08□□□□□ -0.48
CCDC78-216ENST00000544996 TNFSF8P32971 234 aa12.08□□□□□ -0.48
CCDC78-216ENST00000544996 PIGPP57054 158 aa12.08□□□□□ -0.48
CCDC78-216ENST00000544996 RPEL1Q2QD12 228 aa12.08□□□□□ -0.48
CCDC78-216ENST00000544996 HSD17B13Q7Z5P4 300 aaPredicted RBP12.08□□□□□ -0.48
CCDC78-216ENST00000544996 OR4D10Q8NGI6 311 aa12.08□□□□□ -0.48
CCDC78-216ENST00000544996 OR1L8Q8NGR8 309 aa12.08□□□□□ -0.48
CCDC78-216ENST00000544996 TSC22D3Q99576 134 aa12.08□□□□□ -0.48
CCDC78-216ENST00000544996 NXF2Q9GZY0 626 aaKnown RBP12.08□□□□□ -0.48
CCDC78-216ENST00000544996 FKBP11Q9NYL4 201 aa12.08□□□□□ -0.48
CCDC78-216ENST00000544996 FBXL7Q9UJT9 491 aa12.08□□□□□ -0.48
CCDC78-216ENST00000544996 ZNF256Q9Y2P7 627 aaPredicted RBP12.08□□□□□ -0.48
CCDC78-216ENST00000544996 DISC1C4P0D8 188 aa12.07□□□□□ -0.48
CCDC78-216ENST00000544996 CYB5BO43169 146 aa12.07□□□□□ -0.48
CCDC78-216ENST00000544996 REG1AP05451 166 aa12.07□□□□□ -0.48
CCDC78-216ENST00000544996 CTRB1P17538 263 aa12.07□□□□□ -0.48
CCDC78-216ENST00000544996 PPP5CP53041 499 aa12.07□□□□□ -0.48
CCDC78-216ENST00000544996 RND3P61587 244 aa12.07□□□□□ -0.48
CCDC78-216ENST00000544996 KLF5Q13887 457 aaPredicted RBP12.07□□□□□ -0.48
CCDC78-216ENST00000544996 CTRB2Q6GPI1 263 aa12.07□□□□□ -0.48
CCDC78-216ENST00000544996 CCDC71LQ8N9Z2 235 aa12.07□□□□□ -0.48
CCDC78-216ENST00000544996 OR6Q1Q8NGQ2 317 aa12.07□□□□□ -0.48
CCDC78-216ENST00000544996 COPZ2Q9P299 210 aa12.07□□□□□ -0.48
CCDC78-216ENST00000544996 PRNDQ9UKY0 176 aa12.07□□□□□ -0.48
CCDC78-216ENST00000544996 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.06□□□□□ -0.48
CCDC78-216ENST00000544996 TEX50A0A1B0GTY4 177 aa12.06□□□□□ -0.48
CCDC78-216ENST00000544996 IGLC7A0M8Q6 106 aa12.06□□□□□ -0.48
CCDC78-216ENST00000544996 CGB1A6NKQ9 187 aa12.06□□□□□ -0.48
CCDC78-216ENST00000544996 LY86O95711 162 aa12.06□□□□□ -0.48
CCDC78-216ENST00000544996 TRBV12-3P01733 135 aa12.06□□□□□ -0.48
CCDC78-216ENST00000544996 AKAIN1P0CW23 69 aa12.06□□□□□ -0.48
CCDC78-216ENST00000544996 PI3P19957 117 aa12.06□□□□□ -0.48
CCDC78-216ENST00000544996 PTBP1P26599 531 aaKnown RBP eCLIP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms