RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 HMGN3Q15651 99 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 RGS21Q2M5E4 152 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF880Q6PDB4 577 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 BAIAP2L2Q6UXY1 529 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 SIGLECL1Q8N7X8 197 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 OR10V1Q8NGI7 309 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 OR9G1Q8NH87 305 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 MCFD2Q8NI22 146 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 IL1F10Q8WWZ1 152 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 LEAP2Q969E1 77 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 CREB3L1Q96BA8 519 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 DCUN1D5Q9BTE7 237 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 TMPRSS5Q9H3S3 457 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF286AQ9HBT8 521 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF230Q9UIE0 474 aaPredicted RBP4.1□□□□□ -1.75
CLIP1-217ENST00000543205 ELF5Q9UKW6 265 aaPredicted RBP4.1□□□□□ -1.75
CLIP1-217ENST00000543205 TBL2Q9Y4P3 447 aaKnown RBP4.1□□□□□ -1.75
CLIP1-217ENST00000543205 SOX21Q9Y651 276 aaPredicted RBP4.1□□□□□ -1.75
CLIP1-217ENST00000543205 ODF3BA8MYP8 253 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 TCF21O43680 179 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 IGF1P05019 195 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 MELTFP08582 738 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 FBP1P09467 338 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 SCTP09683 121 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 ZBTB25P24278 435 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 HTR1DP28221 377 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 CD34P28906 385 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 CBX5P45973 191 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 TAS2R20P59543 309 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 BAMBIQ13145 260 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 SRSF7Q16629 238 aaKnown RBP eCLIP4.09□□□□□ -1.75
CLIP1-217ENST00000543205 DEFB112Q30KQ8 113 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 PAPPA-AS1Q5QFB9 102 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 MINOS1Q5TGZ0 78 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF626Q68DY1 528 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 PRIMA1Q86XR5 153 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 OR4A4PQ8NGN8 299 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 OR10X1Q8NGY0 326 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 OR52E5Q8NH55 327 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 C15orf40Q8WUR7 153 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 MAFIPQ8WZ33 124 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 SLIRPQ9GZT3 109 aaKnown RBP4.09□□□□□ -1.75
CLIP1-217ENST00000543205 MMP28Q9H239 520 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 AAMDCQ9H7C9 122 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 IFT46Q9NQC8 304 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 JPT1Q9UK76 154 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 PSG11Q9UQ72 335 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 AMMECR1Q9Y4X0 333 aaPredicted RBP4.09□□□□□ -1.75
CLIP1-217ENST00000543205 MINOS1-NBL1R4GNA1 71 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 URGCP-MRPS24S4R325 110 aa4.09□□□□□ -1.75
CLIP1-217ENST00000543205 SONP18583 2426 aaKnown RBP4.09□□□□□ -1.75
CLIP1-217ENST00000543205 MDFIC2A0A1B0GVS7 189 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 LEUTXA8MZ59 168 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 BUB1B-PAK6H3BSN5 160 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 RHODO00212 210 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 FABP7O15540 132 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 YPEL1O60688 119 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 TSPAN13O95857 204 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 PTHLHP12272 177 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 IL3RAP26951 378 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 PRSS3P35030 304 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 PPP1CCP36873 323 aaKnown RBP4.09□□□□□ -1.76
CLIP1-217ENST00000543205 CEACAM6P40199 344 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 ACTBP60709 375 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 ACTG1P63261 375 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 FOXE3Q13461 319 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 HLA-DRB5Q30154 266 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 BEAN1Q3B7T3 259 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 MORN2Q502X0 79 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 UTF1Q5T230 341 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 OR4A47Q6IF82 309 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 Q6YL49 198 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 Q6ZPA2 131 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 ZNF546Q86UE3 836 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 SNX29P2Q8IUI4 249 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 C8orf31Q8N9H6 132 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 OR4P4Q8NGL7 312 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 OR10J5Q8NHC4 309 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 MALSU1Q96EH3 234 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 DIRAS2Q96HU8 199 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 YPEL2Q96QA6 119 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 DPM3Q9P2X0 92 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 HILPDAQ9Y5L2 63 aa4.09□□□□□ -1.76
CLIP1-217ENST00000543205 TSSC4Q9Y5U2 329 aaPredicted RBP4.09□□□□□ -1.76
CLIP1-217ENST00000543205 LOC105371267A0A1B0GV96 52 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 MEIS3P1A6NDR6 274 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 H3BTX0 84 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 TIMM23O14925 209 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 ARPC1BO15143 372 aaKnown RBP4.08□□□□□ -1.76
CLIP1-217ENST00000543205 BET1O15155 118 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 GPR137BO60478 399 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 CA1P00915 261 aaPredicted RBP4.08□□□□□ -1.76
CLIP1-217ENST00000543205 IGLV1-47P01700 117 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 HLA-DQB1P01920 261 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 CTXN2P0C2S0 81 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 ANXA3P12429 323 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 PMCHP20382 165 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 HILS1P60008 231 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 GNMTQ14749 295 aa4.08□□□□□ -1.76
CLIP1-217ENST00000543205 FAM53AQ6NSI3 398 aaPredicted RBP4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms