RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 SMPD3Q9NY59 655 aaPredicted RBP4.54□□□□□ -1.68
CD44-237ENST00000534082 TNXBP22105 4242 aa4.54□□□□□ -1.68
CD44-237ENST00000534082 IGLV11-55A0A075B6I3 123 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 TRBV5-7A0A0A0MS05 114 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 DAPL1A0PJW8 107 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 TMEM212A6NML5 194 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 J3QLW9 94 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 TSC22D2O75157 780 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 CRYZL1O95825 349 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 FAM107AO95990 144 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 CRYGCP07315 174 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 SPART-AS1P0CW21 52 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 SAA1P0DJI8 122 aaPredicted RBP4.53□□□□□ -1.68
CD44-237ENST00000534082 RAP2AP10114 183 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 HIST1H1BP16401 226 aaKnown RBP4.53□□□□□ -1.68
CD44-237ENST00000534082 MGMTP16455 207 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 ZNF19P17023 458 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 ZBTB25P24278 435 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 BDKRB2P30411 391 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 EMP1P54849 157 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 KRTAP10-1P60331 282 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 DLK1P80370 383 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 IRF3Q14653 427 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 CDK10Q15131 360 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 KLK9Q2XQG4 91 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 ZNF600Q6ZNG1 722 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 MOB1BQ7L9L4 216 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 SPARTQ8N0X7 666 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.53□□□□□ -1.68
CD44-237ENST00000534082 CSNK1G2-AS1Q8NCQ2 148 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 NUDT10Q8NFP7 164 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 OR5AK2Q8NH90 309 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 DNAJC9Q8WXX5 260 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 MUL1Q969V5 352 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 PTX4Q96A99 478 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 NUDT11Q96G61 164 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 CMTM3Q96MX0 182 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 ZNF184Q99676 751 aaPredicted RBP4.53□□□□□ -1.68
CD44-237ENST00000534082 THTPAQ9BU02 230 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 RHPN1-AS1Q9BWJ2 59 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 KRTAP1-5Q9BYS1 174 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 CHMP1AQ9HD42 196 aaPredicted RBP4.53□□□□□ -1.68
CD44-237ENST00000534082 ARGLU1Q9NWB6 273 aaPredicted RBP4.53□□□□□ -1.68
CD44-237ENST00000534082 AASSQ9UDR5 926 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 SMPXQ9UHP9 88 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 KLK9Q9UKQ9 250 aa4.53□□□□□ -1.68
CD44-237ENST00000534082 IGHV3-49A0A0A0MS15 119 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 OR2T8A6NH00 312 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 ZAR1LA6NP61 321 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 K7EMT4 169 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 NDUFA4O00483 81 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 CHEK1O14757 476 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 CRTAPO75718 401 aaPredicted RBP4.52□□□□□ -1.69
CD44-237ENST00000534082 DFFBO76075 338 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 NAPSAO96009 420 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 REG1AP05451 166 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 CD2P06729 351 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 IL6RP08887 468 aaPredicted RBP4.52□□□□□ -1.69
CD44-237ENST00000534082 RRASP10301 218 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 DEFA4P12838 97 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 RPL27AP46776 148 aaKnown RBP4.52□□□□□ -1.69
CD44-237ENST00000534082 SNRPGP62308 76 aaKnown RBP4.52□□□□□ -1.69
CD44-237ENST00000534082 PAFAH1B2P68402 229 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 HLA-DRB3P79483 266 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 TTC32Q5I0X7 151 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 ZNF880Q6PDB4 577 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 GLIPR1L1Q6UWM5 242 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 FAM24BQ8N5W8 94 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 C5orf30Q96GV9 206 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 NIPSNAP3BQ9BS92 247 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 OR2D2Q9H210 308 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 CDIP1Q9H305 208 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 RIBC2Q9H4K1 309 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 SDHAF2Q9NX18 166 aa4.52□□□□□ -1.69
CD44-237ENST00000534082 PAIP2BQ9ULR5 123 aaKnown RBP4.52□□□□□ -1.69
CD44-237ENST00000534082 TRAV6A0A075B6T7 132 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 IGHV7-4-1A0A0J9YVY3 117 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 TEX48A0A1B0GUV7 120 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 C15orf62A8K5M9 175 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 E7EUB6 86 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 E9PI62 339 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 ZNF735P0CB33 412 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 PTBP1P26599 531 aaKnown RBP eCLIP4.51□□□□□ -1.69
CD44-237ENST00000534082 PRDX6P30041 224 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 PLA2G7Q13093 441 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 TPBGQ13641 420 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 FAM90A2PQ658T7 463 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 AWAT2Q6E213 333 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 C6orf201Q7Z4U5 140 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 DHFR2Q86XF0 187 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 DEFB107AQ8IZN7 70 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 JAGN1Q8N5M9 183 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 TMEM116Q8NCL8 245 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 OSR1Q8TAX0 266 aaPredicted RBP4.51□□□□□ -1.69
CD44-237ENST00000534082 DEFB104AQ8WTQ1 72 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 RFKQ969G6 155 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 ORAI1Q96D31 301 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 BSCL2Q96G97 398 aaPredicted RBP4.51□□□□□ -1.69
CD44-237ENST00000534082 FAAP24Q9BTP7 215 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 RDH8Q9NYR8 311 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 213.2 ms