RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 OR2B8PP59922 312 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 ZNF45Q02386 682 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 ZNF616Q08AN1 781 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 FAAP20Q6NZ36 180 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 OR4C16Q8NGL9 310 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 TRIM63Q969Q1 353 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 OR5B12Q96R08 314 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 THAP7Q9BT49 309 aaPredicted RBP10.02□□□□□ -0.81
VPS28-216ENST00000533806 TMEM140Q9NV12 185 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 SLC2A8Q9NY64 477 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 NDUFA13Q9P0J0 144 aa10.02□□□□□ -0.81
VPS28-216ENST00000533806 HMX3A6NHT5 357 aa10.01□□□□□ -0.81
VPS28-216ENST00000533806 NPIPB5A8MRT5 1133 aa10.01□□□□□ -0.81
VPS28-216ENST00000533806 KRASP01116 189 aa10.01□□□□□ -0.81
VPS28-216ENST00000533806 S100GP29377 79 aa10.01□□□□□ -0.81
VPS28-216ENST00000533806 EGFEM1PQ0D2K5 195 aa10.01□□□□□ -0.81
VPS28-216ENST00000533806 SURF2Q15527 256 aaPredicted RBP10.01□□□□□ -0.81
VPS28-216ENST00000533806 OR13C8Q8NGS7 320 aa10.01□□□□□ -0.81
VPS28-216ENST00000533806 MARCH1Q8TCQ1 289 aa10.01□□□□□ -0.81
VPS28-216ENST00000533806 SEC22AQ96IW7 307 aa10.01□□□□□ -0.81
VPS28-216ENST00000533806 USMG5Q96IX5 58 aa10.01□□□□□ -0.81
VPS28-216ENST00000533806 PHB2Q99623 299 aa10.01□□□□□ -0.81
VPS28-216ENST00000533806 RTBDNQ9BSG5 229 aaPredicted RBP10.01□□□□□ -0.81
VPS28-216ENST00000533806 TGP01266 2768 aa10.01□□□□□ -0.81
VPS28-216ENST00000533806 IGHV4OR15-8A0A075B7B6 117 aa10□□□□□ -0.81
VPS28-216ENST00000533806 A0A087WW49 117 aa10□□□□□ -0.81
VPS28-216ENST00000533806 A0A0G2JLM5 398 aa10□□□□□ -0.81
VPS28-216ENST00000533806 IGLC7A0M8Q6 106 aa10□□□□□ -0.81
VPS28-216ENST00000533806 IGHV3-11P01762 117 aa10□□□□□ -0.81
VPS28-216ENST00000533806 CTSDP07339 412 aaPredicted RBP10□□□□□ -0.81
VPS28-216ENST00000533806 OR8U8P0C7N1 319 aa10□□□□□ -0.81
VPS28-216ENST00000533806 PGAM2P15259 253 aa10□□□□□ -0.81
VPS28-216ENST00000533806 AREGP15514 252 aa10□□□□□ -0.81
VPS28-216ENST00000533806 CTRB1P17538 263 aa10□□□□□ -0.81
VPS28-216ENST00000533806 G6PCP35575 357 aa10□□□□□ -0.81
VPS28-216ENST00000533806 PIGPP57054 158 aa10□□□□□ -0.81
VPS28-216ENST00000533806 KLF9Q13886 244 aaPredicted RBP10□□□□□ -0.81
VPS28-216ENST00000533806 SCGB2B2Q4G0G5 96 aa10□□□□□ -0.81
VPS28-216ENST00000533806 CTRB2Q6GPI1 263 aa10□□□□□ -0.81
VPS28-216ENST00000533806 ZNF343Q6P1L6 599 aa10□□□□□ -0.81
VPS28-216ENST00000533806 DMBX1Q8NFW5 382 aa10□□□□□ -0.81
VPS28-216ENST00000533806 OR6Q1Q8NGQ2 317 aa10□□□□□ -0.81
VPS28-216ENST00000533806 ZFAND1Q8TCF1 268 aa10□□□□□ -0.81
VPS28-216ENST00000533806 FANCD2OSQ96PS1 177 aa10□□□□□ -0.81
VPS28-216ENST00000533806 TP53RKQ96S44 253 aa10□□□□□ -0.81
VPS28-216ENST00000533806 MCRIP2Q9BUT9 160 aaKnown RBP10□□□□□ -0.81
VPS28-216ENST00000533806 HRASLSQ9HDD0 168 aa10□□□□□ -0.81
VPS28-216ENST00000533806 ZNF355PQ9NSJ1 428 aa10□□□□□ -0.81
VPS28-216ENST00000533806 COA4Q9NYJ1 87 aa10□□□□□ -0.81
VPS28-216ENST00000533806 GPR132Q9UNW8 380 aa10□□□□□ -0.81
VPS28-216ENST00000533806 ZNF257Q9Y2Q1 563 aa10□□□□□ -0.81
VPS28-216ENST00000533806 TEX50A0A1B0GTY4 177 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 DISC1C4P0D8 188 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 LINC01619G3V211 115 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 H0Y980 276 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 PRH1P02810 166 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 HSPB1P04792 205 aaKnown RBP9.99□□□□□ -0.81
VPS28-216ENST00000533806 P0C879 139 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 RPA2P15927 270 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 PSMB6P28072 239 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 S100A5P33763 92 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 ECI1P42126 302 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 PPP5CP53041 499 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 KRTAP10-11P60412 298 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 DEFA5Q01523 94 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 PDLIM3Q53GG5 364 aaPredicted RBP9.99□□□□□ -0.81
VPS28-216ENST00000533806 C19orf35Q6ZS72 473 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 SLC25A42Q86VD7 318 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 Q8N402 240 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 OR51S1Q8NGJ8 323 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 PRRT1Q99946 306 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 SRSF8Q9BRL6 282 aaKnown RBP9.99□□□□□ -0.81
VPS28-216ENST00000533806 C5orf66Q9H5L9 145 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 AKIP1Q9NQ31 210 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 NDUFA4L2Q9NRX3 87 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 TMEM14BQ9NUH8 114 aa9.99□□□□□ -0.81
VPS28-216ENST00000533806 C3orf85A0A1B0GTC6 90 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 C13orf42A0A1B0GVH6 325 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 FAM223BA6NKX1 122 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 DBX1A6NMT0 343 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 PRB2P02812 416 aaPredicted RBP9.98□□□□□ -0.81
VPS28-216ENST00000533806 ERVK-16P61578 105 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 RHOGP84095 191 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 PYDC2Q56P42 97 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 FAM223AQ8IWN6 122 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 GDPD1Q8N9F7 314 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 NECAP1Q8NC96 275 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 DCUN1D4Q92564 292 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 DLX4Q92988 240 aaPredicted RBP9.98□□□□□ -0.81
VPS28-216ENST00000533806 FYTTD1Q96QD9 318 aaKnown RBP9.98□□□□□ -0.81
VPS28-216ENST00000533806 QTRT1Q9BXR0 403 aaKnown RBP9.98□□□□□ -0.81
VPS28-216ENST00000533806 COMMD5Q9GZQ3 224 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 SRRQ9GZT4 340 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 NSG2Q9Y328 171 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 DMRT1Q9Y5R6 373 aa9.98□□□□□ -0.81
VPS28-216ENST00000533806 B3GALNT1O75752 331 aa9.97□□□□□ -0.81
VPS28-216ENST00000533806 IGKV1-5P01602 117 aa9.97□□□□□ -0.81
VPS28-216ENST00000533806 TRBV12-3P01733 135 aa9.97□□□□□ -0.81
VPS28-216ENST00000533806 SERPINE2P07093 398 aa9.97□□□□□ -0.81
VPS28-216ENST00000533806 UCP1P25874 307 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms