RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 SOSTQ9BQB4 213 aa12.35□□□□□ -0.43
LIME1-209ENST00000494776 THAP7Q9BT49 309 aaPredicted RBP12.35□□□□□ -0.43
LIME1-209ENST00000494776 COPZ2Q9P299 210 aa12.35□□□□□ -0.43
LIME1-209ENST00000494776 TRAV3A0A0B4J244 114 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 ANKRD20A5PA0PJZ0 165 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 SNAPC5O75971 98 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 HSPB1P04792 205 aaKnown RBP12.34□□□□□ -0.43
LIME1-209ENST00000494776 SERPINE2P07093 398 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 IL6RP08887 468 aaPredicted RBP12.34□□□□□ -0.43
LIME1-209ENST00000494776 MYOD1P15172 320 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 ECI1P42126 302 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 RND3P61587 244 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 FHL3Q13643 280 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 KPRPQ5T749 579 aaPredicted RBP12.34□□□□□ -0.43
LIME1-209ENST00000494776 FOXB2Q5VYV0 432 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 TTC9CQ8N5M4 171 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 CCDC71LQ8N9Z2 235 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 OR4C16Q8NGL9 310 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 OR13C8Q8NGS7 320 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 MARCH1Q8TCQ1 289 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 USMG5Q96IX5 58 aa12.34□□□□□ -0.43
LIME1-209ENST00000494776 FAM212BQ9NTI7 297 aaPredicted RBP12.34□□□□□ -0.43
LIME1-209ENST00000494776 C14orf166Q9Y224 244 aaKnown RBP12.34□□□□□ -0.43
LIME1-209ENST00000494776 IGHV4OR15-8A0A075B7B6 117 aa12.33□□□□□ -0.44
LIME1-209ENST00000494776 A0A087WW49 117 aa12.33□□□□□ -0.44
LIME1-209ENST00000494776 TEX22C9J3V5 150 aa12.33□□□□□ -0.44
LIME1-209ENST00000494776 E7EUB6 86 aa12.33□□□□□ -0.44
LIME1-209ENST00000494776 BRI3O95415 125 aa12.33□□□□□ -0.44
LIME1-209ENST00000494776 PRH1P02810 166 aa12.33□□□□□ -0.44
LIME1-209ENST00000494776 ZNF735P0CB33 412 aa12.33□□□□□ -0.44
LIME1-209ENST00000494776 RHOGP84095 191 aa12.33□□□□□ -0.44
LIME1-209ENST00000494776 DEFA5Q01523 94 aa12.33□□□□□ -0.44
LIME1-209ENST00000494776 SPANXN2Q5MJ10 180 aa12.33□□□□□ -0.44
LIME1-209ENST00000494776 PRRT1Q99946 306 aa12.33□□□□□ -0.44
LIME1-209ENST00000494776 MCUBQ9NWR8 336 aa12.33□□□□□ -0.44
LIME1-209ENST00000494776 ZNF257Q9Y2Q1 563 aa12.33□□□□□ -0.44
LIME1-209ENST00000494776 C3orf85A0A1B0GTC6 90 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 ANKRD34BA5PLL1 514 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 FAM223BA6NKX1 122 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 DHFRP00374 187 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 PRB2P02812 416 aaPredicted RBP12.32□□□□□ -0.44
LIME1-209ENST00000494776 CTSDP07339 412 aaPredicted RBP12.32□□□□□ -0.44
LIME1-209ENST00000494776 DEFA4P12838 97 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 HOXD3P31249 432 aaPredicted RBP12.32□□□□□ -0.44
LIME1-209ENST00000494776 SLURP1P55000 103 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 ATP5G2Q06055 141 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 H2BFWTQ7Z2G1 175 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 FAM223AQ8IWN6 122 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 Q8N402 240 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 OR51S1Q8NGJ8 323 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 RANGRFQ9HD47 186 aaPredicted RBP12.32□□□□□ -0.44
LIME1-209ENST00000494776 SCP2D1Q9UJQ7 156 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 V9GYH0 126 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 NOTCH1P46531 2555 aa12.32□□□□□ -0.44
LIME1-209ENST00000494776 NPIPB5A8MRT5 1133 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 SEC14L6B5MCN3 397 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 H0Y980 276 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 OVOL1O14753 267 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 FGF2P09038 288 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 AREGP15514 252 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 PTBP1P26599 531 aaKnown RBP eCLIP12.31□□□□□ -0.44
LIME1-209ENST00000494776 PSMB6P28072 239 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 FAUP35544 74 aaKnown RBP12.31□□□□□ -0.44
LIME1-209ENST00000494776 AP3S2P59780 193 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 OR2B8PP59922 312 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 C9orf66Q5T8R8 295 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 REC114Q7Z4M0 266 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 CCDC190Q86UF4 302 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 TOMM5Q8N4H5 51 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 DCUN1D4Q92564 292 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 TSC22D3Q99576 134 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 HINT2Q9BX68 163 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 QTRT1Q9BXR0 403 aaKnown RBP12.31□□□□□ -0.44
LIME1-209ENST00000494776 AKIP1Q9NQ31 210 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 FKBP11Q9NYL4 201 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 PRNDQ9UKY0 176 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 NSG2Q9Y328 171 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 OR51B2Q9Y5P1 312 aa12.31□□□□□ -0.44
LIME1-209ENST00000494776 TEX13DA0A0J9YY54 714 aaPredicted RBP12.3□□□□□ -0.44
LIME1-209ENST00000494776 TEX50A0A1B0GTY4 177 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 A0A1B0GW64 132 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 RBMXL2O75526 392 aaKnown RBP12.3□□□□□ -0.44
LIME1-209ENST00000494776 OR2J3O76001 311 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 ATG12O94817 140 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 REG1AP05451 166 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 TRAPPC2P0DI81 140 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 TRAPPC2BP0DI82 140 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 SURF2Q15527 256 aaPredicted RBP12.3□□□□□ -0.44
LIME1-209ENST00000494776 TRIM16LQ309B1 348 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 CADM3Q8N126 398 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 NECAP1Q8NC96 275 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 OR1L8Q8NGR8 309 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 OR4A16Q8NH70 328 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 DLX4Q92988 240 aaPredicted RBP12.3□□□□□ -0.44
LIME1-209ENST00000494776 MRGPRFQ96AM1 343 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 SCGB3A2Q96PL1 93 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 TP53RKQ96S44 253 aa12.3□□□□□ -0.44
LIME1-209ENST00000494776 PEF1Q9UBV8 284 aaKnown RBP12.3□□□□□ -0.44
LIME1-209ENST00000494776 TNCP24821 2201 aa12.29□□□□□ -0.44
LIME1-209ENST00000494776 TRBV9A0A0B4J1U6 114 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms