RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 RAB40CQ96S21 281 aa10.11□□□□□ -0.79
VPS52-220ENST00000493674 MAGT1Q9H0U3 335 aa10.11□□□□□ -0.79
VPS52-220ENST00000493674 RBKSQ9H477 322 aa10.11□□□□□ -0.79
VPS52-220ENST00000493674 NUP50Q9UKX7 468 aa10.11□□□□□ -0.79
VPS52-220ENST00000493674 SIGLEC9Q9Y336 463 aa10.11□□□□□ -0.79
VPS52-220ENST00000493674 NIPBLQ6KC79 2804 aaeCLIP10.11□□□□□ -0.79
VPS52-220ENST00000493674 C2CD3Q4AC94 2353 aa10.11□□□□□ -0.79
VPS52-220ENST00000493674 ZFHX3Q15911 3703 aa10.11□□□□□ -0.79
VPS52-220ENST00000493674 SETD2Q9BYW2 2564 aaPredicted RBP10.11□□□□□ -0.79
VPS52-220ENST00000493674 MSGN1A6NI15 193 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 SMAD7O15105 426 aaKnown RBP10.1□□□□□ -0.79
VPS52-220ENST00000493674 NBR2O15453 112 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 ARPC5O15511 151 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 SSSCA1O60232 199 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 MED6O75586 246 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 RLN2P04090 185 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 FBP1P09467 338 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 P2RY1P47900 373 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 F2RL1P55085 397 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 TAS2R30P59541 319 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 HSPE1P61604 102 aaKnown RBP10.1□□□□□ -0.79
VPS52-220ENST00000493674 RPL8P62917 257 aaKnown RBP10.1□□□□□ -0.79
VPS52-220ENST00000493674 PRSS8Q16651 343 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 FAM120AOSQ5T036 256 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 ACOT7LQ6ZUV0 252 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 DCUN1D4Q92564 292 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 SMIM8Q96KF7 97 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 PRDM13Q9H4Q3 707 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 ZNF430Q9H8G1 570 aaPredicted RBP10.1□□□□□ -0.79
VPS52-220ENST00000493674 FKBP11Q9NYL4 201 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 TCF19Q9Y242 345 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 SOX21Q9Y651 276 aaPredicted RBP10.1□□□□□ -0.79
VPS52-220ENST00000493674 WSB1Q9Y6I7 421 aa10.1□□□□□ -0.79
VPS52-220ENST00000493674 INS-IGF2F8WCM5 200 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 CHST1O43916 411 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 OR2F2O95006 317 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 NXPH3O95157 252 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 HKR1P10072 659 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 MYOD1P15172 320 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 CD24P25063 80 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 MAS1LP35410 378 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 VDAC2P45880 294 aaPredicted RBP10.09□□□□□ -0.79
VPS52-220ENST00000493674 PRCDQ00LT1 54 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 OR2F1Q13607 317 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 LRRC75BQ2VPJ9 315 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 MMD2Q8IY49 270 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 KCNRGQ8N5I3 272 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 TEX29Q8N6K0 151 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 OR8H1Q8NGG4 311 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 OR5B3Q8NH48 314 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 LYRM2Q9NU23 88 aaPredicted RBP10.09□□□□□ -0.79
VPS52-220ENST00000493674 METTL1Q9UBP6 276 aaKnown RBP10.09□□□□□ -0.79
VPS52-220ENST00000493674 OR51B2Q9Y5P1 312 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 NF1P21359 2839 aa10.09□□□□□ -0.79
VPS52-220ENST00000493674 TEX50A0A1B0GTY4 177 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 A0A1B0GW64 132 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 CGB1A6NKQ9 187 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 WRBO00258 174 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 TSC22D2O75157 780 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 LY86O95711 162 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 FAM106CPP0CH98 169 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 TMEM11P17152 192 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 PVALBP20472 110 aaPredicted RBP10.08□□□□□ -0.8
VPS52-220ENST00000493674 PJVKQ0ZLH3 352 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 MMDQ15546 238 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 C5orf64Q2M2E5 130 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 CLEC9AQ6UXN8 241 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 PPP1R27Q86WC6 154 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 OR2C3Q8N628 320 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 DTD1Q8TEA8 209 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 ZDHHC16Q969W1 377 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 CIB3Q96Q77 187 aaPredicted RBP10.08□□□□□ -0.8
VPS52-220ENST00000493674 MFFQ9GZY8 342 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 FBXL15Q9H469 300 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 NDUFA4L2Q9NRX3 87 aa10.08□□□□□ -0.8
VPS52-220ENST00000493674 A0A0D9SG52 128 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 IGSF23A1L1A6 192 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 KCNAB3O43448 404 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 GPR137BO60478 399 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 RBMXL2O75526 392 aaKnown RBP10.07□□□□□ -0.8
VPS52-220ENST00000493674 COMPP49747 757 aaPredicted RBP10.07□□□□□ -0.8
VPS52-220ENST00000493674 HES1Q14469 280 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 HNF4GQ14541 408 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 BSXQ3C1V8 233 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 TMEM14EPQ6UXP3 125 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 TMUB2Q71RG4 321 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 BCL6BQ8N143 479 aaPredicted RBP10.07□□□□□ -0.8
VPS52-220ENST00000493674 STPG2Q8N412 459 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 Q8N9W7 124 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 INO80EQ8NBZ0 244 aaPredicted RBP10.07□□□□□ -0.8
VPS52-220ENST00000493674 OR1L8Q8NGR8 309 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 SSX3Q99909 188 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 TMEM160Q9NX00 188 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 FAM96BQ9Y3D0 163 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 BOLA1Q9Y3E2 137 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 HSPB11Q9Y547 144 aa10.07□□□□□ -0.8
VPS52-220ENST00000493674 A6NDX4 124 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 CEBPZOSA8MTT3 80 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 E7EUB6 86 aa10.06□□□□□ -0.8
VPS52-220ENST00000493674 L7N2F9 121 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms