RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 SGPP2Q8IWX5 399 aa11.44□□□□□ -0.58
LIMS3-205ENST00000487150 OR5B3Q8NH48 314 aa11.44□□□□□ -0.58
LIMS3-205ENST00000487150 FAM110DQ8TAY7 271 aaPredicted RBP11.44□□□□□ -0.58
LIMS3-205ENST00000487150 CCDC32Q9BV29 185 aa11.44□□□□□ -0.58
LIMS3-205ENST00000487150 GPR61Q9BZJ8 451 aa11.44□□□□□ -0.58
LIMS3-205ENST00000487150 ZNF355PQ9NSJ1 428 aa11.44□□□□□ -0.58
LIMS3-205ENST00000487150 KCNIP3Q9Y2W7 256 aa11.44□□□□□ -0.58
LIMS3-205ENST00000487150 ANXA3P12429 323 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 MYCNOSP40205 109 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 AKR1C2P52895 323 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 TPPP2P59282 170 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 RUNX1Q01196 453 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 DHODHQ02127 395 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 MRGPRG-AS1Q2M3A8 158 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 CNPY1Q3B7I2 92 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 ZNF585BQ52M93 769 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 USMG5Q96IX5 58 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 QTRT1Q9BXR0 403 aaKnown RBP11.43□□□□□ -0.58
LIMS3-205ENST00000487150 NAA60Q9H7X0 242 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 COA4Q9NYJ1 87 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 CACFD1Q9UGQ2 172 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 GPR132Q9UNW8 380 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 ZNF257Q9Y2Q1 563 aa11.43□□□□□ -0.58
LIMS3-205ENST00000487150 CRYM-AS1A6NIL9 109 aa11.42□□□□□ -0.58
LIMS3-205ENST00000487150 FAM223BA6NKX1 122 aa11.42□□□□□ -0.58
LIMS3-205ENST00000487150 NPIPB5A8MRT5 1133 aa11.42□□□□□ -0.58
LIMS3-205ENST00000487150 DUS4LO95620 317 aaKnown RBP11.42□□□□□ -0.58
LIMS3-205ENST00000487150 TRGV3P03979 118 aa11.42□□□□□ -0.58
LIMS3-205ENST00000487150 UCP1P25874 307 aa11.42□□□□□ -0.58
LIMS3-205ENST00000487150 G6PCP35575 357 aa11.42□□□□□ -0.58
LIMS3-205ENST00000487150 RBMS2Q15434 407 aaKnown RBP11.42□□□□□ -0.58
LIMS3-205ENST00000487150 FAM219AQ8IW50 185 aa11.42□□□□□ -0.58
LIMS3-205ENST00000487150 FAM223AQ8IWN6 122 aa11.42□□□□□ -0.58
LIMS3-205ENST00000487150 ZNF491Q8N8L2 437 aa11.42□□□□□ -0.58
LIMS3-205ENST00000487150 OR1L8Q8NGR8 309 aa11.42□□□□□ -0.58
LIMS3-205ENST00000487150 RNASE11Q8TAA1 199 aaKnown RBP11.42□□□□□ -0.58
LIMS3-205ENST00000487150 MRGPRFQ96AM1 343 aa11.42□□□□□ -0.58
LIMS3-205ENST00000487150 RRNAD1Q96FB5 475 aaKnown RBP11.42□□□□□ -0.58
LIMS3-205ENST00000487150 FYTTD1Q96QD9 318 aaKnown RBP11.42□□□□□ -0.58
LIMS3-205ENST00000487150 C5orf66Q9H5L9 145 aa11.42□□□□□ -0.58
LIMS3-205ENST00000487150 C13orf42A0A1B0GVH6 325 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 C15orf61A6NNL5 157 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 CCL24O00175 119 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 SOX15O60248 233 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 RBMXL2O75526 392 aaKnown RBP11.41□□□□□ -0.58
LIMS3-205ENST00000487150 IL6RP08887 468 aaPredicted RBP11.41□□□□□ -0.58
LIMS3-205ENST00000487150 IL7P13232 177 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 CD33P20138 364 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 C8orf86Q6ZUL3 223 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 TTC9CQ8N5M4 171 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 ADAD2Q8NCV1 583 aaKnown RBP11.41□□□□□ -0.58
LIMS3-205ENST00000487150 OR4A16Q8NH70 328 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 IL22RA2Q969J5 263 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 GALNT14Q96FL9 552 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 SEC22AQ96IW7 307 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 TMEM56Q96MV1 263 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 TP53RKQ96S44 253 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 RTBDNQ9BSG5 229 aaPredicted RBP11.41□□□□□ -0.58
LIMS3-205ENST00000487150 MCRIP2Q9BUT9 160 aaKnown RBP11.41□□□□□ -0.58
LIMS3-205ENST00000487150 WDR12Q9GZL7 423 aaKnown RBP11.41□□□□□ -0.58
LIMS3-205ENST00000487150 TMEM222Q9H0R3 208 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 KLK15Q9H2R5 256 aa11.41□□□□□ -0.58
LIMS3-205ENST00000487150 LGALS1P09382 135 aaKnown RBP11.4□□□□□ -0.58
LIMS3-205ENST00000487150 OR8U8P0C7N1 319 aa11.4□□□□□ -0.58
LIMS3-205ENST00000487150 HIST1H1BP16401 226 aaKnown RBP11.4□□□□□ -0.58
LIMS3-205ENST00000487150 OR2B8PP59922 312 aa11.4□□□□□ -0.58
LIMS3-205ENST00000487150 C10orf55Q5SWW7 151 aa11.4□□□□□ -0.58
LIMS3-205ENST00000487150 OR5T1Q8NG75 326 aa11.4□□□□□ -0.58
LIMS3-205ENST00000487150 RBPMSQ93062 196 aaKnown RBP11.4□□□□□ -0.58
LIMS3-205ENST00000487150 LSM10Q969L4 123 aaKnown RBP11.4□□□□□ -0.58
LIMS3-205ENST00000487150 RCC1LQ96I51 464 aaKnown RBP11.4□□□□□ -0.58
LIMS3-205ENST00000487150 PDCD10Q9BUL8 212 aa11.4□□□□□ -0.58
LIMS3-205ENST00000487150 AKIP1Q9NQ31 210 aa11.4□□□□□ -0.58
LIMS3-205ENST00000487150 TMEM14BQ9NUH8 114 aa11.4□□□□□ -0.58
LIMS3-205ENST00000487150 TEX22C9J3V5 150 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 OR5AC1P0C628 307 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 TRAPPC2P0DI81 140 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 TRAPPC2BP0DI82 140 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 DEFA4P12838 97 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 UBE2MP61081 183 aaKnown RBP11.39□□□□□ -0.59
LIMS3-205ENST00000487150 ZNF616Q08AN1 781 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 BAK1Q16611 211 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 TMEM128Q5BJH2 165 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 ASPHD1Q5U4P2 390 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 LCNL1Q6ZST4 164 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 NECAP1Q8NC96 275 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 OR1L6Q8NGR2 347 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 DPF1Q92782 380 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 P2RX4Q99571 388 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 THYN1Q9P016 225 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 OR51B2Q9Y5P1 312 aa11.39□□□□□ -0.59
LIMS3-205ENST00000487150 I3L521 148 aa11.38□□□□□ -0.59
LIMS3-205ENST00000487150 CDS2O95674 445 aa11.38□□□□□ -0.59
LIMS3-205ENST00000487150 CRYGCP07315 174 aa11.38□□□□□ -0.59
LIMS3-205ENST00000487150 AKR1C4P17516 323 aa11.38□□□□□ -0.59
LIMS3-205ENST00000487150 PSMB6P28072 239 aa11.38□□□□□ -0.59
LIMS3-205ENST00000487150 FHL3Q13643 280 aa11.38□□□□□ -0.59
LIMS3-205ENST00000487150 HIST2H2BDQ6DRA6 164 aa11.38□□□□□ -0.59
LIMS3-205ENST00000487150 TMED4Q7Z7H5 227 aa11.38□□□□□ -0.59
LIMS3-205ENST00000487150 ZNF429Q86V71 674 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 132.9 ms