RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 EIF4E3Q8N5X7 224 aaKnown RBP11.03□□□□□ -0.64
HMGN1-216ENST00000486741 ARFGEF3Q5TH69 2177 aa11.03□□□□□ -0.64
HMGN1-216ENST00000486741 SAA2-SAA4A0A096LPE2 208 aa11.02□□□□□ -0.64
HMGN1-216ENST00000486741 TGIF2-C20orf24A0A0A6YYL0 155 aa11.02□□□□□ -0.64
HMGN1-216ENST00000486741 SAA2P0DJI9 122 aaPredicted RBP11.02□□□□□ -0.64
HMGN1-216ENST00000486741 GNG4P50150 75 aa11.02□□□□□ -0.64
HMGN1-216ENST00000486741 SLC35B1P78383 322 aa11.02□□□□□ -0.64
HMGN1-216ENST00000486741 SRSF4Q08170 494 aaKnown RBP11.02□□□□□ -0.64
HMGN1-216ENST00000486741 TMEM18Q96B42 140 aa11.02□□□□□ -0.64
HMGN1-216ENST00000486741 FAM103A1Q9BTL3 118 aaKnown RBP11.02□□□□□ -0.64
HMGN1-216ENST00000486741 ZNF331Q9NQX6 463 aaPredicted RBP11.02□□□□□ -0.64
HMGN1-216ENST00000486741 TRAV34A0A0B4J273 112 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 CA2P00918 260 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 FAM3BP58499 235 aaPredicted RBP11.02□□□□□ -0.65
HMGN1-216ENST00000486741 OR4A47Q6IF82 309 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 ELOVL1Q9BW60 279 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 ANAPC10Q9UM13 185 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 A0A0G2JNJ9 132 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.02□□□□□ -0.65
HMGN1-216ENST00000486741 LINC00473A8K010 186 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 SEC14L6B5MCN3 397 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 H3BTX0 84 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 M0R143 59 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 TRGC2P03986 189 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 SLC25A5P05141 298 aaKnown RBP11.02□□□□□ -0.65
HMGN1-216ENST00000486741 PNRC1Q12796 327 aaPredicted RBP11.02□□□□□ -0.65
HMGN1-216ENST00000486741 GCSAMLQ5JQS6 135 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 FAM122AQ96E09 287 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 SGK494Q96LW2 274 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 SPOCK3Q9BQ16 436 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 MANBALQ9NQG1 85 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 ZNRD1Q9P1U0 126 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 Q9UFV3 132 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 CSPG4Q6UVK1 2322 aa11.02□□□□□ -0.65
HMGN1-216ENST00000486741 ZNF729A6NN14 1252 aaPredicted RBP11.01□□□□□ -0.65
HMGN1-216ENST00000486741 KBTBD11O94819 623 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 TMEM50AO95807 157 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 OR9G9P0C7N8 305 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 LY6DQ14210 128 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 LRRC75BQ2VPJ9 315 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 TCTEX1D1Q8N7M0 179 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 ZNF439Q8NDP4 499 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 CTDSP1Q9GZU7 261 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 TRAPPC1Q9Y5R8 145 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 IGKV1D-17A0A075B6S4 117 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 H0Y8G0 127 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 TNFSF13O75888 250 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 ARL14EPLP0DKL9 152 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 CNN1P51911 297 aaKnown RBP11.01□□□□□ -0.65
HMGN1-216ENST00000486741 PTTG1IPP53801 180 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 GAMTQ14353 236 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 ASCL5Q7RTU5 278 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 C16orf82Q7Z2V1 217 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 PIP4P1Q86T03 277 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 OR2T10Q8NGZ9 312 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 SSC4DQ8WTU2 575 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 NEUROG1Q92886 237 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 HIST1H2BAQ96A08 127 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 RANP62826 216 aaKnown RBP11.01□□□□□ -0.65
HMGN1-216ENST00000486741 Q56UQ5 140 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 DIRC2Q96SL1 478 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 NPCDR1Q9BY65 106 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 SLC31A2O15432 143 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 ACAA1P09110 424 aaPredicted RBP11.01□□□□□ -0.65
HMGN1-216ENST00000486741 MYOD1P15172 320 aa11.01□□□□□ -0.65
HMGN1-216ENST00000486741 DUTP33316 252 aaKnown RBP11.01□□□□□ -0.65
HMGN1-216ENST00000486741 PACRGQ96M98 296 aaPredicted RBP11.01□□□□□ -0.65
HMGN1-216ENST00000486741 MRPL20Q9BYC9 149 aaKnown RBP11.01□□□□□ -0.65
HMGN1-216ENST00000486741 TECRQ9NZ01 308 aaKnown RBP11.01□□□□□ -0.65
HMGN1-216ENST00000486741 CARHSP1Q9Y2V2 147 aaKnown RBP11.01□□□□□ -0.65
HMGN1-216ENST00000486741 LRP4O75096 1905 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 PPIAL4CA0A0B4J2A2 164 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 MBD3L4A6NDZ8 208 aaPredicted RBP11□□□□□ -0.65
HMGN1-216ENST00000486741 MBD3L3A6NE82 208 aaPredicted RBP11□□□□□ -0.65
HMGN1-216ENST00000486741 MBD3L5A6NJ08 208 aaPredicted RBP11□□□□□ -0.65
HMGN1-216ENST00000486741 TCF21O43680 179 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 PPIAL4GP0DN37 164 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 MBD3L2Q8NHZ7 208 aaPredicted RBP11□□□□□ -0.65
HMGN1-216ENST00000486741 WFIKKN1Q96NZ8 548 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 SEBOXQ9HB31 216 aaPredicted RBP11□□□□□ -0.65
HMGN1-216ENST00000486741 GOLT1BQ9Y3E0 138 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 TRAV3A0A0B4J244 114 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 C9JQL5 133 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 RAB4AP20338 218 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 UCNP55089 124 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 OR5I1Q13606 314 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 DUX4L9Q6RFH8 374 aaPredicted RBP11□□□□□ -0.65
HMGN1-216ENST00000486741 TOMM20LQ6UXN7 152 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 FUT9Q9Y231 359 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 VCANP13611 3396 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 FOXI3A8MTJ6 420 aaPredicted RBP11□□□□□ -0.65
HMGN1-216ENST00000486741 LY6HO94772 140 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 DDTP30046 118 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 TIMP3P35625 211 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 RND2P52198 227 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 OR5B3Q8NH48 314 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 BORCS7Q96B45 105 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 ELOVL5Q9NYP7 299 aa11□□□□□ -0.65
HMGN1-216ENST00000486741 XKRY2A2RUG3 117 aa10.99□□□□□ -0.65
HMGN1-216ENST00000486741 RRHO14718 337 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms