RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 SPANXN2Q5MJ10 180 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 SAMD5Q5TGI4 173 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 Q8N402 240 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 WFDC9Q8NEX5 89 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 OR51S1Q8NGJ8 323 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 OR6Q1Q8NGQ2 317 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 MRGPRFQ96AM1 343 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 MCUBQ9NWR8 336 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 COPZ2Q9P299 210 aa11.45□□□□□ -0.58
USP4-212ENST00000486549 C13orf42A0A1B0GVH6 325 aa11.44□□□□□ -0.58
USP4-212ENST00000486549 TEX22C9J3V5 150 aa11.44□□□□□ -0.58
USP4-212ENST00000486549 E7EUB6 86 aa11.44□□□□□ -0.58
USP4-212ENST00000486549 H3BUA1 57 aa11.44□□□□□ -0.58
USP4-212ENST00000486549 PRH1P02810 166 aa11.44□□□□□ -0.58
USP4-212ENST00000486549 LGALS1P09382 135 aaKnown RBP11.44□□□□□ -0.58
USP4-212ENST00000486549 RND3P61587 244 aa11.44□□□□□ -0.58
USP4-212ENST00000486549 CCDC71LQ8N9Z2 235 aa11.44□□□□□ -0.58
USP4-212ENST00000486549 ADAD2Q8NCV1 583 aaKnown RBP11.44□□□□□ -0.58
USP4-212ENST00000486549 OR1N2Q8NGR9 330 aa11.44□□□□□ -0.58
USP4-212ENST00000486549 TRIM63Q969Q1 353 aa11.44□□□□□ -0.58
USP4-212ENST00000486549 RCC1LQ96I51 464 aaKnown RBP11.44□□□□□ -0.58
USP4-212ENST00000486549 PRRT1Q99946 306 aa11.44□□□□□ -0.58
USP4-212ENST00000486549 COMMD5Q9GZQ3 224 aa11.44□□□□□ -0.58
USP4-212ENST00000486549 C14orf166Q9Y224 244 aaKnown RBP11.44□□□□□ -0.58
USP4-212ENST00000486549 A0A1B0GW64 132 aa11.43□□□□□ -0.58
USP4-212ENST00000486549 DUS4LO95620 317 aaKnown RBP11.43□□□□□ -0.58
USP4-212ENST00000486549 SERPINE2P07093 398 aa11.43□□□□□ -0.58
USP4-212ENST00000486549 CTSDP07339 412 aaPredicted RBP11.43□□□□□ -0.58
USP4-212ENST00000486549 ECI1P42126 302 aa11.43□□□□□ -0.58
USP4-212ENST00000486549 RUNX1Q01196 453 aa11.43□□□□□ -0.58
USP4-212ENST00000486549 ZNF616Q08AN1 781 aa11.43□□□□□ -0.58
USP4-212ENST00000486549 BEAN1Q3B7T3 259 aa11.43□□□□□ -0.58
USP4-212ENST00000486549 C19orf35Q6ZS72 473 aa11.43□□□□□ -0.58
USP4-212ENST00000486549 TOMM5Q8N4H5 51 aa11.43□□□□□ -0.58
USP4-212ENST00000486549 DPF1Q92782 380 aa11.43□□□□□ -0.58
USP4-212ENST00000486549 TP53RKQ96S44 253 aa11.43□□□□□ -0.58
USP4-212ENST00000486549 NSG2Q9Y328 171 aa11.43□□□□□ -0.58
USP4-212ENST00000486549 IGHV4OR15-8A0A075B7B6 117 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 A0A087WW49 117 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 C3orf85A0A1B0GTC6 90 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 H0Y980 276 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 IGKV1-39P01597 117 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 IGKV1D-39P04432 117 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 REG1AP05451 166 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 OR8U8P0C7N1 319 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 AREGP15514 252 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 PTBP1P26599 531 aaKnown RBP eCLIP11.42□□□□□ -0.58
USP4-212ENST00000486549 AP3S2P59780 193 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 OR2B8PP59922 312 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 FHL3Q13643 280 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 KLF9Q13886 244 aaPredicted RBP11.42□□□□□ -0.58
USP4-212ENST00000486549 SP6Q3SY56 376 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 TTC9CQ8N5M4 171 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 GPR61Q9BZJ8 451 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 SRRQ9GZT4 340 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 FAM212BQ9NTI7 297 aaPredicted RBP11.42□□□□□ -0.58
USP4-212ENST00000486549 SCP2D1Q9UJQ7 156 aa11.42□□□□□ -0.58
USP4-212ENST00000486549 A0A0G2JLM5 398 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 TEX13DA0A0J9YY54 714 aaPredicted RBP11.41□□□□□ -0.58
USP4-212ENST00000486549 ANKRD34BA5PLL1 514 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 CGB1A6NKQ9 187 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 LINC01619G3V211 115 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 RBMXL2O75526 392 aaKnown RBP11.41□□□□□ -0.58
USP4-212ENST00000486549 SNAPC5O75971 98 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 FAUP35544 74 aaKnown RBP11.41□□□□□ -0.58
USP4-212ENST00000486549 ETV6P41212 452 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 SLURP1P55000 103 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 RHOGP84095 191 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 ZNF45Q02386 682 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 SURF2Q15527 256 aaPredicted RBP11.41□□□□□ -0.58
USP4-212ENST00000486549 TRIM16LQ309B1 348 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 ZNF57Q68EA5 555 aaPredicted RBP11.41□□□□□ -0.58
USP4-212ENST00000486549 SLC25A42Q86VD7 318 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 SEC22AQ96IW7 307 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 RTBDNQ9BSG5 229 aaPredicted RBP11.41□□□□□ -0.58
USP4-212ENST00000486549 HINT2Q9BX68 163 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 C5orf66Q9H5L9 145 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 SLC2A8Q9NY64 477 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 ZNF257Q9Y2Q1 563 aa11.41□□□□□ -0.58
USP4-212ENST00000486549 TEX50A0A1B0GTY4 177 aa11.4□□□□□ -0.58
USP4-212ENST00000486549 NPIPB5A8MRT5 1133 aa11.4□□□□□ -0.58
USP4-212ENST00000486549 OR2J3O76001 311 aa11.4□□□□□ -0.58
USP4-212ENST00000486549 PRB2P02812 416 aaPredicted RBP11.4□□□□□ -0.58
USP4-212ENST00000486549 PSMB6P28072 239 aa11.4□□□□□ -0.58
USP4-212ENST00000486549 AKR1C2P52895 323 aa11.4□□□□□ -0.58
USP4-212ENST00000486549 H2BFWTQ7Z2G1 175 aa11.4□□□□□ -0.58
USP4-212ENST00000486549 OR10W1Q8NGF6 305 aa11.4□□□□□ -0.58
USP4-212ENST00000486549 MCRIP2Q9BUT9 160 aaKnown RBP11.4□□□□□ -0.58
USP4-212ENST00000486549 QTRT1Q9BXR0 403 aaKnown RBP11.4□□□□□ -0.58
USP4-212ENST00000486549 AKIP1Q9NQ31 210 aa11.4□□□□□ -0.58
USP4-212ENST00000486549 GPR132Q9UNW8 380 aa11.4□□□□□ -0.58
USP4-212ENST00000486549 OR51B2Q9Y5P1 312 aa11.4□□□□□ -0.58
USP4-212ENST00000486549 BRI3O95415 125 aa11.39□□□□□ -0.59
USP4-212ENST00000486549 HSPB1P04792 205 aaKnown RBP11.39□□□□□ -0.59
USP4-212ENST00000486549 OR5AC1P0C628 307 aa11.39□□□□□ -0.59
USP4-212ENST00000486549 TRAPPC2P0DI81 140 aa11.39□□□□□ -0.59
USP4-212ENST00000486549 TRAPPC2BP0DI82 140 aa11.39□□□□□ -0.59
USP4-212ENST00000486549 DEFA4P12838 97 aa11.39□□□□□ -0.59
USP4-212ENST00000486549 HOXD3P31249 432 aaPredicted RBP11.39□□□□□ -0.59
USP4-212ENST00000486549 INPP1P49441 399 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms