RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ARSJQ5FYB0 599 aaPredicted RBP13.51□□□□□ -0.25
VIM-205ENST00000485947 H2BFWTQ7Z2G1 175 aa13.51□□□□□ -0.25
VIM-205ENST00000485947 NDUFA11Q86Y39 141 aa13.51□□□□□ -0.25
VIM-205ENST00000485947 DMBX1Q8NFW5 382 aa13.51□□□□□ -0.25
VIM-205ENST00000485947 OR2T35Q8NGX2 323 aa13.51□□□□□ -0.25
VIM-205ENST00000485947 GPR146Q96CH1 333 aa13.51□□□□□ -0.25
VIM-205ENST00000485947 RNF5Q99942 180 aa13.51□□□□□ -0.25
VIM-205ENST00000485947 SLC25A33Q9BSK2 321 aa13.51□□□□□ -0.25
VIM-205ENST00000485947 ZFP57Q9NU63 452 aa13.51□□□□□ -0.25
VIM-205ENST00000485947 A0A0G2JRQ6 117 aa13.5□□□□□ -0.25
VIM-205ENST00000485947 SHOXO15266 292 aa13.5□□□□□ -0.25
VIM-205ENST00000485947 TSPAN15O95858 294 aa13.5□□□□□ -0.25
VIM-205ENST00000485947 C1QBP02746 253 aa13.5□□□□□ -0.25
VIM-205ENST00000485947 IGKV1-16P04430 117 aa13.5□□□□□ -0.25
VIM-205ENST00000485947 LGALS7P47929 136 aa13.5□□□□□ -0.25
VIM-205ENST00000485947 CD300CQ08708 224 aa13.5□□□□□ -0.25
VIM-205ENST00000485947 IL15RAQ13261 267 aa13.5□□□□□ -0.25
VIM-205ENST00000485947 OR4D5Q8NGN0 318 aa13.5□□□□□ -0.25
VIM-205ENST00000485947 RHOVQ96L33 236 aa13.5□□□□□ -0.25
VIM-205ENST00000485947 HARBI1Q96MB7 349 aa13.5□□□□□ -0.25
VIM-205ENST00000485947 TET2Q6N021 2002 aaPredicted RBP13.49□□□□□ -0.25
VIM-205ENST00000485947 OPN1MWP04001 364 aa13.49□□□□□ -0.25
VIM-205ENST00000485947 PET100P0DJ07 73 aa13.49□□□□□ -0.25
VIM-205ENST00000485947 OPN1MW2P0DN77 364 aa13.49□□□□□ -0.25
VIM-205ENST00000485947 OPN1MW3P0DN78 364 aa13.49□□□□□ -0.25
VIM-205ENST00000485947 RPS16P62249 146 aaKnown RBP13.49□□□□□ -0.25
VIM-205ENST00000485947 ZFP69Q49AA0 526 aa13.49□□□□□ -0.25
VIM-205ENST00000485947 VSTM2AQ8TAG5 236 aa13.49□□□□□ -0.25
VIM-205ENST00000485947 PPP1R1CQ8WVI7 109 aa13.49□□□□□ -0.25
VIM-205ENST00000485947 GSKIPQ9P0R6 139 aa13.49□□□□□ -0.25
VIM-205ENST00000485947 CACFD1Q9UGQ2 172 aa13.49□□□□□ -0.25
VIM-205ENST00000485947 VWFP04275 2813 aa13.49□□□□□ -0.25
VIM-205ENST00000485947 IGHV3-72A0A0B4J1Y9 119 aa13.48□□□□□ -0.25
VIM-205ENST00000485947 PITX3O75364 302 aa13.48□□□□□ -0.25
VIM-205ENST00000485947 HNRNPCP07910 306 aaKnown RBP eCLIP13.48□□□□□ -0.25
VIM-205ENST00000485947 PSMB6P28072 239 aa13.48□□□□□ -0.25
VIM-205ENST00000485947 VMA21Q3ZAQ7 101 aa13.48□□□□□ -0.25
VIM-205ENST00000485947 OR4F17Q8NGA8 305 aa13.48□□□□□ -0.25
VIM-205ENST00000485947 OR4A5Q8NH83 315 aa13.48□□□□□ -0.25
VIM-205ENST00000485947 OR1S1Q8NH92 325 aa13.48□□□□□ -0.25
VIM-205ENST00000485947 OR4F4Q96R69 305 aa13.48□□□□□ -0.25
VIM-205ENST00000485947 TSNAXQ99598 290 aaKnown RBP13.48□□□□□ -0.25
VIM-205ENST00000485947 TMEM140Q9NV12 185 aa13.48□□□□□ -0.25
VIM-205ENST00000485947 BET1LQ9NYM9 111 aa13.48□□□□□ -0.25
VIM-205ENST00000485947 CACNG5Q9UF02 275 aa13.48□□□□□ -0.25
VIM-205ENST00000485947 MOB4Q9Y3A3 225 aa13.48□□□□□ -0.25
VIM-205ENST00000485947 FAM90A26D6RGX4 464 aa13.47□□□□□ -0.25
VIM-205ENST00000485947 FGF16O43320 207 aa13.47□□□□□ -0.25
VIM-205ENST00000485947 SPDEFO95238 335 aa13.47□□□□□ -0.25
VIM-205ENST00000485947 FGF2P09038 288 aa13.47□□□□□ -0.25
VIM-205ENST00000485947 NKX2-1P43699 371 aaPredicted RBP13.47□□□□□ -0.25
VIM-205ENST00000485947 EBI3Q14213 229 aa13.47□□□□□ -0.25
VIM-205ENST00000485947 SSX9Q7RTT3 188 aa13.47□□□□□ -0.25
VIM-205ENST00000485947 FOXRED2Q8IWF2 684 aa13.47□□□□□ -0.25
VIM-205ENST00000485947 PUSL1Q8N0Z8 303 aaKnown RBP13.47□□□□□ -0.25
VIM-205ENST00000485947 OR2T10Q8NGZ9 312 aa13.47□□□□□ -0.25
VIM-205ENST00000485947 FAM110DQ8TAY7 271 aaPredicted RBP13.47□□□□□ -0.25
VIM-205ENST00000485947 WDR89Q96FK6 387 aaPredicted RBP13.47□□□□□ -0.25
VIM-205ENST00000485947 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.47□□□□□ -0.25
VIM-205ENST00000485947 CMYA5Q8N3K9 4069 aa13.47□□□□□ -0.25
VIM-205ENST00000485947 G3V3Q6 166 aa13.46□□□□□ -0.25
VIM-205ENST00000485947 MPC2O95563 127 aa13.46□□□□□ -0.25
VIM-205ENST00000485947 MOSP00540 346 aa13.46□□□□□ -0.25
VIM-205ENST00000485947 RLN2P04090 185 aa13.46□□□□□ -0.25
VIM-205ENST00000485947 IL6RP08887 468 aaPredicted RBP13.46□□□□□ -0.25
VIM-205ENST00000485947 SAA1P0DJI8 122 aaPredicted RBP13.46□□□□□ -0.25
VIM-205ENST00000485947 UBE2KP61086 200 aa13.46□□□□□ -0.25
VIM-205ENST00000485947 RAB32Q13637 225 aa13.46□□□□□ -0.25
VIM-205ENST00000485947 AARDQ4LEZ3 155 aa13.46□□□□□ -0.25
VIM-205ENST00000485947 OR4A47Q6IF82 309 aa13.46□□□□□ -0.25
VIM-205ENST00000485947 C11orf87Q6NUJ2 197 aa13.46□□□□□ -0.25
VIM-205ENST00000485947 Q6ZRM9 215 aa13.46□□□□□ -0.25
VIM-205ENST00000485947 NOXA1Q86UR1 476 aa13.46□□□□□ -0.25
VIM-205ENST00000485947 HYLS1Q96M11 299 aa13.46□□□□□ -0.25
VIM-205ENST00000485947 NBEAL2Q6ZNJ1 2754 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 SRRM4A7MD48 611 aaKnown RBP13.45□□□□□ -0.26
VIM-205ENST00000485947 SMLR1H3BR10 107 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 ST8SIA3O43173 380 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 SNAPC5O75971 98 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 KBTBD11O94819 623 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 SCGB1D2O95969 90 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 IGLV2-23P01705 113 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 MBPP02686 304 aaPredicted RBP13.45□□□□□ -0.26
VIM-205ENST00000485947 AMY1AP04745 511 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 SNRNP70P08621 437 aaKnown RBP13.45□□□□□ -0.26
VIM-205ENST00000485947 OR9G9P0C7N8 305 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 CD28P10747 220 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 SLC25A4P12235 298 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 CD24P25063 80 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 ID3Q02535 119 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 IZUMO4Q1ZYL8 232 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 LRRC37A5PQ49AS3 106 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 Q6ZS46 218 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 CENPVQ7Z7K6 275 aaPredicted RBP13.45□□□□□ -0.26
VIM-205ENST00000485947 ZNF429Q86V71 674 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 TEX45Q8NA69 505 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 OR5AU1Q8NGC0 362 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 OR4A16Q8NH70 328 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 THAP6Q8TBB0 222 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 TMEM167AQ8TBQ9 72 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms