RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 MAP1LC3CQ9BXW4 147 aa11.4□□□□□ -0.58
USP42-206ENST00000479544 POLR3KQ9Y2Y1 108 aaPredicted RBP11.4□□□□□ -0.58
USP42-206ENST00000479544 IGKV1-5P01602 117 aa11.4□□□□□ -0.59
USP42-206ENST00000479544 SP1P08047 785 aa11.4□□□□□ -0.59
USP42-206ENST00000479544 FAM87AP0C7U9 286 aa11.4□□□□□ -0.59
USP42-206ENST00000479544 NMUP48645 174 aa11.4□□□□□ -0.59
USP42-206ENST00000479544 LDLRAD2Q5SZI1 272 aa11.4□□□□□ -0.59
USP42-206ENST00000479544 BPIFA4PQ86YQ2 179 aa11.4□□□□□ -0.59
USP42-206ENST00000479544 TCF19Q9Y242 345 aa11.4□□□□□ -0.59
USP42-206ENST00000479544 SMPD2O60906 423 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 TDGF1P3P51864 188 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 LYZP61626 148 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 LINC01551Q86U37 167 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 BEND2Q8NDZ0 799 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 KCNS1Q96KK3 526 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 HLA-DQA1P01909 254 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 Q6ZVH6 145 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 NFAM1Q8NET5 270 aaPredicted RBP11.39□□□□□ -0.59
USP42-206ENST00000479544 NAA38Q9BRA0 125 aaKnown RBP11.39□□□□□ -0.59
USP42-206ENST00000479544 CHRDL1Q9BU40 450 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 TRAV24A0A0B4J272 114 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 PRR19A6NJB7 356 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 LINC00869P0C866 280 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 COX5BP10606 129 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 MAS1LP35410 378 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 CDKN1AP38936 164 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 TM4SF20Q53R12 229 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 SPSB4Q96A44 273 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 IL36BQ9NZH7 164 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 PLXNB1O43157 2135 aa11.39□□□□□ -0.59
USP42-206ENST00000479544 IGHV3-72A0A0B4J1Y9 119 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 K7EQM0 130 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 MT-ND6P03923 174 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 C20orf204Q6ZNR8 217 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 OR2V2Q96R30 315 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 TEX50A0A1B0GTY4 177 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 LNP1A1A4G5 178 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 PFN1P07737 140 aaKnown RBP11.38□□□□□ -0.59
USP42-206ENST00000479544 IGFBP2P18065 325 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 TRA2AQ13595 282 aaKnown RBP eCLIP11.38□□□□□ -0.59
USP42-206ENST00000479544 PCOLCEQ15113 449 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 PMCHL1Q16048 86 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 FAM53AQ6NSI3 398 aaPredicted RBP11.38□□□□□ -0.59
USP42-206ENST00000479544 TMEM105Q8N8V8 129 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 NABP2Q9BQ15 211 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 LPAR2Q9HBW0 351 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 TMEM242Q9NWH2 141 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 TIMM9Q9Y5J7 89 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 ZGRF1Q86YA3 2104 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 TMPRSS2O15393 492 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 FAM162BQ5T6X4 162 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 HCP5Q6MZN7 132 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 ZNF841Q6ZN19 808 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 MIR17HGQ75NE6 70 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 ZIC4Q8N9L1 334 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 SIGLEC12Q96PQ1 595 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 MCRIP2Q9BUT9 160 aaKnown RBP11.38□□□□□ -0.59
USP42-206ENST00000479544 MUC21A0A0G2JKD1 596 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 MUC21A0A140T8X8 626 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 PRDX2P32119 198 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 RNPS1Q15287 305 aaKnown RBP11.38□□□□□ -0.59
USP42-206ENST00000479544 MUC21Q5SSG8 566 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 SLC25A34Q6PIV7 304 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 LHFPL4Q7Z7J7 247 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 ZNF441Q8N8Z8 693 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 ZNRF1Q8ND25 227 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 DECR2Q9NUI1 292 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 OR51B2Q9Y5P1 312 aa11.38□□□□□ -0.59
USP42-206ENST00000479544 FAM90A10PA6NDY2 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A18PA6NE21 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A16PA6NEW6 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A20PA6NIJ5 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A8PA6NJQ4 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A7PA6NKC0 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A22PA8MWA6 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A12PA8MX19 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A5PA8MXJ8 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A23PA8MXZ1 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A26D6RGX4 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 PRSS1P07477 247 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 CYC1P08574 325 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 IL6RP08887 468 aaPredicted RBP11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A15PP0C7V4 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A13PP0C7W8 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A14PP0C7W9 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM90A24PP0C7X0 464 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 TIMP3P35625 211 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 NBL1P41271 181 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 CT55Q8WUE5 264 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 NABP1Q96AH0 204 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 HARBI1Q96MB7 349 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 REPIN1Q9BWE0 567 aaKnown RBP11.37□□□□□ -0.59
USP42-206ENST00000479544 SAP30LQ9HAJ7 183 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 GNB4Q9HAV0 340 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 F11RQ9Y624 299 aaKnown RBP11.37□□□□□ -0.59
USP42-206ENST00000479544 IGHV1-45A0A0A0MS14 117 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 PGPA6NDG6 321 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 PAXXQ9BUH6 204 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 ARRDC1-AS1Q9H2J1 176 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 CLEC5AQ9NY25 188 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms