RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 COA4Q9NYJ1 87 aa10.09□□□□□ -0.79
COL28A1-206ENST00000465339 RSL24D1Q9UHA3 163 aaKnown RBP10.09□□□□□ -0.79
COL28A1-206ENST00000465339 PFDN2Q9UHV9 154 aa10.09□□□□□ -0.79
COL28A1-206ENST00000465339 ZNF701M0R085 212 aaPredicted RBP10.08□□□□□ -0.8
COL28A1-206ENST00000465339 UPK2O00526 184 aa10.08□□□□□ -0.8
COL28A1-206ENST00000465339 RAB3DO95716 219 aa10.08□□□□□ -0.8
COL28A1-206ENST00000465339 IL6RP08887 468 aaPredicted RBP10.08□□□□□ -0.8
COL28A1-206ENST00000465339 APELAP0DMC3 54 aa10.08□□□□□ -0.8
COL28A1-206ENST00000465339 HLA-GP17693 338 aa10.08□□□□□ -0.8
COL28A1-206ENST00000465339 TNFSF8P32971 234 aa10.08□□□□□ -0.8
COL28A1-206ENST00000465339 LPAR6P43657 344 aa10.08□□□□□ -0.8
COL28A1-206ENST00000465339 RPL27AP46776 148 aaKnown RBP10.08□□□□□ -0.8
COL28A1-206ENST00000465339 ERVK-16P61578 105 aa10.08□□□□□ -0.8
COL28A1-206ENST00000465339 DGCR2P98153 550 aa10.08□□□□□ -0.8
COL28A1-206ENST00000465339 EGFEM1PQ0D2K5 195 aa10.08□□□□□ -0.8
COL28A1-206ENST00000465339 C9orf66Q5T8R8 295 aa10.08□□□□□ -0.8
COL28A1-206ENST00000465339 STEAP1BQ6NZ63 245 aa10.08□□□□□ -0.8
COL28A1-206ENST00000465339 SMIM4Q8WVI0 70 aa10.08□□□□□ -0.8
COL28A1-206ENST00000465339 ZNF486Q96H40 463 aaPredicted RBP10.08□□□□□ -0.8
COL28A1-206ENST00000465339 ALX4Q9H161 411 aaPredicted RBP10.08□□□□□ -0.8
COL28A1-206ENST00000465339 SLC2A9Q9NRM0 540 aa10.08□□□□□ -0.8
COL28A1-206ENST00000465339 FABP12A6NFH5 140 aa10.07□□□□□ -0.8
COL28A1-206ENST00000465339 S1PR2O95136 353 aa10.07□□□□□ -0.8
COL28A1-206ENST00000465339 IGHV3-11P01762 117 aa10.07□□□□□ -0.8
COL28A1-206ENST00000465339 ZNF735P0CB33 412 aa10.07□□□□□ -0.8
COL28A1-206ENST00000465339 MEF2DQ14814 521 aa10.07□□□□□ -0.8
COL28A1-206ENST00000465339 ZNF585BQ52M93 769 aa10.07□□□□□ -0.8
COL28A1-206ENST00000465339 PHLDA2Q53GA4 152 aa10.07□□□□□ -0.8
COL28A1-206ENST00000465339 C10orf55Q5SWW7 151 aa10.07□□□□□ -0.8
COL28A1-206ENST00000465339 LHFPL1Q86WI0 220 aa10.07□□□□□ -0.8
COL28A1-206ENST00000465339 TERB2Q8NHR7 220 aa10.07□□□□□ -0.8
COL28A1-206ENST00000465339 FYTTD1Q96QD9 318 aaKnown RBP10.07□□□□□ -0.8
COL28A1-206ENST00000465339 COMMD5Q9GZQ3 224 aa10.07□□□□□ -0.8
COL28A1-206ENST00000465339 RBM38Q9H0Z9 239 aaKnown RBP10.07□□□□□ -0.8
COL28A1-206ENST00000465339 RANGRFQ9HD47 186 aaPredicted RBP10.07□□□□□ -0.8
COL28A1-206ENST00000465339 TMEM140Q9NV12 185 aa10.07□□□□□ -0.8
COL28A1-206ENST00000465339 ZNF257Q9Y2Q1 563 aa10.07□□□□□ -0.8
COL28A1-206ENST00000465339 IGHV4OR15-8A0A075B7B6 117 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 A0A087WW49 117 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 TRBV9A0A0B4J1U6 114 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 DPPA5A6NC42 116 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 FAM223BA6NKX1 122 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 MARCH11A6NNE9 402 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 NPIPB5A8MRT5 1133 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 TEX22C9J3V5 150 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 GSTZ1O43708 216 aaPredicted RBP10.06□□□□□ -0.8
COL28A1-206ENST00000465339 DHFRP00374 187 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 PRB2P02812 416 aaPredicted RBP10.06□□□□□ -0.8
COL28A1-206ENST00000465339 PGAM2P15259 253 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 INSL3P51460 131 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 RND3P61587 244 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 TBC1D26Q86UD7 250 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 FAM223AQ8IWN6 122 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 ZFAND1Q8TCF1 268 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 DCUN1D4Q92564 292 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 SOSTQ9BQB4 213 aa10.06□□□□□ -0.8
COL28A1-206ENST00000465339 SRSF8Q9BRL6 282 aaKnown RBP10.06□□□□□ -0.8
COL28A1-206ENST00000465339 AURKAIP1Q9NWT8 199 aaPredicted RBP10.06□□□□□ -0.8
COL28A1-206ENST00000465339 HMX3A6NHT5 357 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 SEC14L6B5MCN3 397 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 DISC1C4P0D8 188 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 E7EUB6 86 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 OVOL1O14753 267 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 KRASP01116 189 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 CRYGCP07315 174 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 AKAIN1P0CW23 69 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 ZP3P21754 424 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 PTBP1P26599 531 aaKnown RBP eCLIP10.05□□□□□ -0.8
COL28A1-206ENST00000465339 HOXD3P31249 432 aaPredicted RBP10.05□□□□□ -0.8
COL28A1-206ENST00000465339 S100A5P33763 92 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 ECI1P42126 302 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 OR2B8PP59922 312 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 KRTAP10-11P60412 298 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 RHOGP84095 191 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 ATP5G2Q06055 141 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 ZNF343Q6P1L6 599 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 NECAP1Q8NC96 275 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 OR4D10Q8NGI6 311 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 DLX4Q92988 240 aaPredicted RBP10.05□□□□□ -0.8
COL28A1-206ENST00000465339 TGP01266 2768 aa10.05□□□□□ -0.8
COL28A1-206ENST00000465339 TRAV3A0A0B4J244 114 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 A0A1B0GW64 132 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 SNAPC5O75971 98 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 RPA2P15927 270 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 HIST1H1BP16401 226 aaKnown RBP10.04□□□□□ -0.8
COL28A1-206ENST00000465339 PSMB6P28072 239 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 G6PCP35575 357 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 SLURP1P55000 103 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 PIGPP57054 158 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 SCGB2B2Q4G0G5 96 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 FAM209BQ5JX69 171 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 THOC7Q6I9Y2 204 aaKnown RBP10.04□□□□□ -0.8
COL28A1-206ENST00000465339 HSD17B13Q7Z5P4 300 aaPredicted RBP10.04□□□□□ -0.8
COL28A1-206ENST00000465339 CCDC71LQ8N9Z2 235 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 TSC22D3Q99576 134 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 AKIP1Q9NQ31 210 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 FKBP11Q9NYL4 201 aa10.04□□□□□ -0.8
COL28A1-206ENST00000465339 PEF1Q9UBV8 284 aaKnown RBP10.04□□□□□ -0.8
COL28A1-206ENST00000465339 TEX50A0A1B0GTY4 177 aa10.03□□□□□ -0.8
COL28A1-206ENST00000465339 ANKRD20A5PA0PJZ0 165 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms