RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 HIST1H2BDP58876 126 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 HIST1H2BCP62807 126 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 HIST2H2BEQ16778 126 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 HIST1H2BHQ93079 126 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 IMMP2LQ96T52 175 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 HIST1H2BNQ99877 126 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 HIST1H2BMQ99879 126 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 CEP290O15078 2479 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 TMEM78Q5T7P6 136 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 GBF1Q92538 1859 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 CYTL1Q9NRR1 136 aa16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 F11RQ9Y624 299 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-204ENST00000463837 JOSD1Q15040 202 aaPredicted RBP16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 REPIN1Q9BWE0 567 aaKnown RBP16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 RRHO14718 337 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 SHISA5Q8N114 240 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 OR4D5Q8NGN0 318 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 SIP14410 1827 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 ASXL3Q9C0F0 2248 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 SCN2AQ99250 2005 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 H3BTX0 84 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 ST6GALNAC3Q8NDV1 305 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 SRSF12Q8WXF0 261 aaKnown RBP16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 LEAP2Q969E1 77 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 SLC17A3O00476 420 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 ID3Q02535 119 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 TFF3Q07654 80 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 ECSCRQ19T08 205 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 C14orf144Q96I85 54 aa16.1■□□□□ 0.17
CCDC88B-204ENST00000463837 C12orf77C9JDV5 145 aa16.09■□□□□ 0.17
CCDC88B-204ENST00000463837 ID1P41134 155 aa16.09■□□□□ 0.17
CCDC88B-204ENST00000463837 LHFPL1Q86WI0 220 aa16.09■□□□□ 0.17
CCDC88B-204ENST00000463837 FLVCR1-AS1Q8TAF5 88 aa16.09■□□□□ 0.17
CCDC88B-204ENST00000463837 MBD3L1Q8WWY6 194 aa16.09■□□□□ 0.17
CCDC88B-204ENST00000463837 TMEM136Q6ZRR5 245 aa16.09■□□□□ 0.17
CCDC88B-204ENST00000463837 OTOFQ9HC10 1997 aa16.09■□□□□ 0.17
CCDC88B-204ENST00000463837 AHCTF1Q8WYP5 2266 aa16.09■□□□□ 0.17
CCDC88B-204ENST00000463837 LINC00271P0C7V0 271 aa16.09■□□□□ 0.17
CCDC88B-204ENST00000463837 TRBV24-1A0A075B6N3 115 aa16.09■□□□□ 0.17
CCDC88B-204ENST00000463837 LDLRAD4O15165 306 aa16.09■□□□□ 0.17
CCDC88B-204ENST00000463837 SRSF7Q16629 238 aaKnown RBP eCLIP16.09■□□□□ 0.17
CCDC88B-204ENST00000463837 IGLV3-32A0A0A0MS00 114 aa16.08■□□□□ 0.17
CCDC88B-204ENST00000463837 H7C2G1 150 aa16.08■□□□□ 0.16
CCDC88B-204ENST00000463837 MTURNQ8N3F0 131 aa16.08■□□□□ 0.16
CCDC88B-204ENST00000463837 OPN3Q9H1Y3 402 aaPredicted RBP16.08■□□□□ 0.16
CCDC88B-204ENST00000463837 FOXD3Q9UJU5 478 aaPredicted RBP16.08■□□□□ 0.16
CCDC88B-204ENST00000463837 IGKV1-9A0A0C4DH69 117 aa16.08■□□□□ 0.16
CCDC88B-204ENST00000463837 IGLV3-19P01714 112 aa16.08■□□□□ 0.16
CCDC88B-204ENST00000463837 TBR1Q16650 682 aa16.08■□□□□ 0.16
CCDC88B-204ENST00000463837 SVILO95425 2214 aa16.08■□□□□ 0.16
CCDC88B-204ENST00000463837 LTBP1Q14766 1721 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 A0A1B0GW15 77 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 A0A1W2PQM1 296 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 MFAP4P55083 255 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 ACP7Q6ZNF0 438 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 EAF1Q96JC9 268 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 HIST1H4GQ99525 98 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 RAB9AP51151 201 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 FOXA3P55318 350 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 OR9G1Q8NH87 305 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 DYNLRB2Q8TF09 96 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 IFI27L2Q9H2X8 130 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 TRAV1-1A0A0B4J248 108 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 SCO2A0A1W2PP80 73 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 CRXO43186 299 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 FAM131CQ96AQ9 280 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 MRPS18CQ9Y3D5 142 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 IZUMO1RA6ND01 250 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 ARF6P62330 175 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 OSR1Q8TAX0 266 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 RTN4RQ9BZR6 473 aa16.07■□□□□ 0.16
CCDC88B-204ENST00000463837 ARL6IP6Q8N6S5 226 aa16.06■□□□□ 0.16
CCDC88B-204ENST00000463837 A1L4Q6 167 aa16.06■□□□□ 0.16
CCDC88B-204ENST00000463837 SLC25A17O43808 307 aa16.06■□□□□ 0.16
CCDC88B-204ENST00000463837 ATP5G3P48201 142 aa16.06■□□□□ 0.16
CCDC88B-204ENST00000463837 C2orf83Q53S99 150 aa16.06■□□□□ 0.16
CCDC88B-204ENST00000463837 WFDC1Q9HC57 220 aa16.06■□□□□ 0.16
CCDC88B-204ENST00000463837 IGHV3-48P01763 117 aa16.06■□□□□ 0.16
CCDC88B-204ENST00000463837 RABAC1Q9UI14 185 aa16.06■□□□□ 0.16
CCDC88B-204ENST00000463837 CHD5Q8TDI0 1954 aa16.06■□□□□ 0.16
CCDC88B-204ENST00000463837 A0A0A6YYD4 124 aa16.06■□□□□ 0.16
CCDC88B-204ENST00000463837 EPOPA6NHQ4 379 aa16.06■□□□□ 0.16
CCDC88B-204ENST00000463837 ZNF124Q15973 351 aa16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 NPIPB3Q92617 1050 aa16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 LPAR2Q9HBW0 351 aa16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 C17orf98A8MV24 154 aa16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 CGAP01215 116 aa16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 SMAGPQ0VAQ4 97 aa16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 FAM166AQ6J272 317 aa16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 WFDC3Q8IUB2 231 aa16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 ATXN7O15265 892 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 SAPCD1Q5SSQ6 148 aa16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 HIST3H2BBQ8N257 126 aa16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 CACNG8Q8WXS5 425 aa16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 AKIRIN1Q9H9L7 192 aaPredicted RBP16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 MTCL1Q9Y4B5 1905 aaKnown RBP16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 FAM90A1Q86YD7 464 aa16.05■□□□□ 0.16
CCDC88B-204ENST00000463837 PROB1E7EW31 1015 aa16.04■□□□□ 0.16
CCDC88B-204ENST00000463837 COX6CP09669 75 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms