RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 C5orf63A6NC05 138 aa12.43□□□□□ -0.42
PTPRU-205ENST00000460170 OR4D5Q8NGN0 318 aa12.43□□□□□ -0.42
PTPRU-205ENST00000460170 TMEM171Q8WVE6 324 aa12.43□□□□□ -0.42
PTPRU-205ENST00000460170 ACACAQ13085 2346 aa12.43□□□□□ -0.42
PTPRU-205ENST00000460170 RRHO14718 337 aa12.43□□□□□ -0.42
PTPRU-205ENST00000460170 REG1AP05451 166 aa12.43□□□□□ -0.42
PTPRU-205ENST00000460170 FAM216BQ8N7L0 139 aa12.43□□□□□ -0.42
PTPRU-205ENST00000460170 TM4SF5O14894 197 aa12.43□□□□□ -0.42
PTPRU-205ENST00000460170 QRFPP83859 136 aa12.43□□□□□ -0.42
PTPRU-205ENST00000460170 ZNF385CQ66K41 422 aaPredicted RBP12.43□□□□□ -0.42
PTPRU-205ENST00000460170 THADAQ6YHU6 1953 aa12.42□□□□□ -0.42
PTPRU-205ENST00000460170 OR4A47Q6IF82 309 aa12.42□□□□□ -0.42
PTPRU-205ENST00000460170 RNF144BQ7Z419 303 aa12.42□□□□□ -0.42
PTPRU-205ENST00000460170 CLEC7AQ9BXN2 247 aa12.42□□□□□ -0.42
PTPRU-205ENST00000460170 TUBA4BQ9H853 241 aa12.42□□□□□ -0.42
PTPRU-205ENST00000460170 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.42□□□□□ -0.42
PTPRU-205ENST00000460170 TCAPO15273 167 aa12.42□□□□□ -0.42
PTPRU-205ENST00000460170 IGHV3-48P01763 117 aa12.42□□□□□ -0.42
PTPRU-205ENST00000460170 TMEM97Q5BJF2 176 aa12.42□□□□□ -0.42
PTPRU-205ENST00000460170 TMEM116Q8NCL8 245 aa12.42□□□□□ -0.42
PTPRU-205ENST00000460170 RBM14Q96PK6 669 aaKnown RBP12.42□□□□□ -0.42
PTPRU-205ENST00000460170 A0A087WWC5 75 aa12.42□□□□□ -0.42
PTPRU-205ENST00000460170 LOC102724200A0A096LPH7 203 aaPredicted RBP12.42□□□□□ -0.42
PTPRU-205ENST00000460170 HOXA4Q00056 320 aaPredicted RBP12.42□□□□□ -0.42
PTPRU-205ENST00000460170 RALYQ9UKM9 306 aaKnown RBP12.42□□□□□ -0.42
PTPRU-205ENST00000460170 SFTPCP11686 197 aa12.42□□□□□ -0.42
PTPRU-205ENST00000460170 ARF6P62330 175 aa12.42□□□□□ -0.42
PTPRU-205ENST00000460170 TMPRSS3P57727 454 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 ZNF324BQ6AW86 544 aaPredicted RBP12.41□□□□□ -0.42
PTPRU-205ENST00000460170 PI4KAP42356 2102 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 IGKV3-7A0A075B6H7 116 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 B9A039 149 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 FAM106CPP0CH98 169 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 TMEM106BQ9NUM4 274 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 GFRA1P56159 465 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 WDR82Q6UXN9 313 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 DPF1Q92782 380 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 WFDC1Q9HC57 220 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 SDF2L1Q9HCN8 221 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 CYTL1Q9NRR1 136 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 HSPB7Q9UBY9 170 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 CENPWQ5EE01 88 aa12.41□□□□□ -0.42
PTPRU-205ENST00000460170 ANAPC1Q9H1A4 1944 aa12.4□□□□□ -0.42
PTPRU-205ENST00000460170 J3KRW8 73 aa12.4□□□□□ -0.42
PTPRU-205ENST00000460170 MUC15Q8N387 334 aa12.4□□□□□ -0.42
PTPRU-205ENST00000460170 IFI27L2Q9H2X8 130 aa12.4□□□□□ -0.42
PTPRU-205ENST00000460170 CD99P14209 185 aa12.4□□□□□ -0.42
PTPRU-205ENST00000460170 SRSF7Q16629 238 aaKnown RBP eCLIP12.4□□□□□ -0.42
PTPRU-205ENST00000460170 DNM1P46Q6ZS02 220 aa12.4□□□□□ -0.42
PTPRU-205ENST00000460170 SPRR3Q9UBC9 169 aa12.4□□□□□ -0.42
PTPRU-205ENST00000460170 SPTBN1Q01082 2364 aaKnown RBP12.4□□□□□ -0.42
PTPRU-205ENST00000460170 PHF3Q92576 2039 aaKnown RBP12.4□□□□□ -0.42
PTPRU-205ENST00000460170 TMEM189A5PLL7 270 aa12.4□□□□□ -0.42
PTPRU-205ENST00000460170 AMY1AP04745 511 aa12.4□□□□□ -0.42
PTPRU-205ENST00000460170 MFAP4P55083 255 aa12.4□□□□□ -0.42
PTPRU-205ENST00000460170 LCN2P80188 198 aa12.4□□□□□ -0.42
PTPRU-205ENST00000460170 LBHQ53QV2 105 aaPredicted RBP12.4□□□□□ -0.42
PTPRU-205ENST00000460170 TMEM177Q53S58 311 aa12.4□□□□□ -0.42
PTPRU-205ENST00000460170 LIPFP07098 398 aa12.4□□□□□ -0.43
PTPRU-205ENST00000460170 FCGR2BP31994 310 aaPredicted RBP12.4□□□□□ -0.43
PTPRU-205ENST00000460170 ICAM4Q14773 271 aa12.4□□□□□ -0.43
PTPRU-205ENST00000460170 OR8A1Q8NGG7 326 aa12.4□□□□□ -0.43
PTPRU-205ENST00000460170 IGFBP2P18065 325 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 OTX1P32242 354 aaPredicted RBP12.39□□□□□ -0.43
PTPRU-205ENST00000460170 DMRT1Q9Y5R6 373 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 YPEL1O60688 119 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 DDTP30046 118 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 KIAA1644Q3SXP7 199 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 YPEL2Q96QA6 119 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 RPLP1P05386 114 aaKnown RBP12.39□□□□□ -0.43
PTPRU-205ENST00000460170 SRIP30626 198 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 CA7P43166 264 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 RTN4RL2Q86UN3 420 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 TMEM183AQ8IXX5 376 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 AKAP6Q13023 2319 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 CD59P13987 128 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 APOBEC3AP31941 199 aaPredicted RBP12.39□□□□□ -0.43
PTPRU-205ENST00000460170 PNKDQ8N490 385 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 FAM57AQ8TBR7 257 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 CDC42EP3Q9UKI2 254 aa12.39□□□□□ -0.43
PTPRU-205ENST00000460170 TRAV30A0A087WSZ9 112 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 TRBV9A0A0B4J1U6 114 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 ZNF25P17030 456 aaPredicted RBP12.38□□□□□ -0.43
PTPRU-205ENST00000460170 MEF2CQ06413 473 aaPredicted RBP12.38□□□□□ -0.43
PTPRU-205ENST00000460170 FAM209BQ5JX69 171 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 TMEM42Q69YG0 159 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 MPDZO75970 2070 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 GRIFINA4D1Z8 144 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 RAMP3O60896 148 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 CGAP01215 116 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 CFPP27918 469 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 PPOXP50336 477 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 Q0VFX4 171 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 PEAR1Q5VY43 1037 aaPredicted RBP12.38□□□□□ -0.43
PTPRU-205ENST00000460170 SGK494Q96LW2 274 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 PLXNA4Q9HCM2 1894 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 DOCK8Q8NF50 2099 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 BMPERQ8N8U9 685 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 REG4Q9BYZ8 158 aa12.38□□□□□ -0.43
PTPRU-205ENST00000460170 CACNA1GO43497 2377 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms