RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 OR4A5Q8NH83 315 aa10.3□□□□□ -0.76
TCOF1-205ENST00000439160 OR5R1Q8NH85 324 aa10.3□□□□□ -0.76
TCOF1-205ENST00000439160 GTF3AQ92664 365 aaKnown RBP10.3□□□□□ -0.76
TCOF1-205ENST00000439160 SMDT1Q9H4I9 107 aa10.3□□□□□ -0.76
TCOF1-205ENST00000439160 ZNF430Q9H8G1 570 aaPredicted RBP10.3□□□□□ -0.76
TCOF1-205ENST00000439160 CORTO00230 105 aa10.3□□□□□ -0.76
TCOF1-205ENST00000439160 PF4V1P10720 104 aa10.3□□□□□ -0.76
TCOF1-205ENST00000439160 NOL4LQ96MY1 436 aaPredicted RBP10.3□□□□□ -0.76
TCOF1-205ENST00000439160 RBM14Q96PK6 669 aaKnown RBP10.3□□□□□ -0.76
TCOF1-205ENST00000439160 MRPL20Q9BYC9 149 aaKnown RBP10.3□□□□□ -0.76
TCOF1-205ENST00000439160 FBXL15Q9H469 300 aa10.3□□□□□ -0.76
TCOF1-205ENST00000439160 RAMP3O60896 148 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 TMEM42Q69YG0 159 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 ANAPC16Q96DE5 110 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 PIMREGQ9BSJ6 248 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 LINC00312Q9Y6C7 94 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 TMEM56-RWDD3S4R434 201 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 MED13Q9UHV7 2174 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 H3BTX0 84 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 P01737 135 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 HSPB1P04792 205 aaKnown RBP10.29□□□□□ -0.76
TCOF1-205ENST00000439160 RNASEKQ6P5S7 137 aaKnown RBP10.29□□□□□ -0.76
TCOF1-205ENST00000439160 SGMS2Q8NHU3 365 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 WFIKKN1Q96NZ8 548 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 TMSB15BA0A087X1C1 80 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 LOC102723971A0A1B0GUV8 181 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 PPOXP50336 477 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 ZNF146Q15072 292 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 MS4A10Q96PG2 267 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 CEP350Q5VT06 3117 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 SRRM5B3KS81 715 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 SEC14L6B5MCN3 397 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 SLC35B1P78383 322 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 QRFPP83859 136 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 FXYD3Q14802 87 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 ZNF474Q6S9Z5 364 aaPredicted RBP10.29□□□□□ -0.76
TCOF1-205ENST00000439160 FOXL2NBQ6ZUU3 175 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 LHFPL1Q86WI0 220 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 OSR1Q8TAX0 266 aaPredicted RBP10.29□□□□□ -0.76
TCOF1-205ENST00000439160 CCL19Q99731 98 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 DPM3Q9P2X0 92 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 RABAC1Q9UI14 185 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 PLXNB3Q9ULL4 1909 aa10.29□□□□□ -0.76
TCOF1-205ENST00000439160 ANKHD1Q8IWZ3 2542 aaKnown RBP10.28□□□□□ -0.76
TCOF1-205ENST00000439160 MALRD1Q5VYJ5 2156 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 SAA2-SAA4A0A096LPE2 208 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 A0A0G2JNJ9 132 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 MBD3L4A6NDZ8 208 aaPredicted RBP10.28□□□□□ -0.76
TCOF1-205ENST00000439160 MBD3L3A6NE82 208 aaPredicted RBP10.28□□□□□ -0.76
TCOF1-205ENST00000439160 MBD3L5A6NJ08 208 aaPredicted RBP10.28□□□□□ -0.76
TCOF1-205ENST00000439160 SAA2P0DJI9 122 aaPredicted RBP10.28□□□□□ -0.76
TCOF1-205ENST00000439160 ARL14EPLP0DKL9 152 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 PDLIM4P50479 330 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 MEF2CQ06413 473 aaPredicted RBP10.28□□□□□ -0.76
TCOF1-205ENST00000439160 MORN2Q502X0 79 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 PQLC2Q6ZP29 291 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 DNM1P46Q6ZS02 220 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 WFDC3Q8IUB2 231 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 RPRMLQ8N4K4 120 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 MBD3L2Q8NHZ7 208 aaPredicted RBP10.28□□□□□ -0.76
TCOF1-205ENST00000439160 SSBP3Q9BWW4 388 aaPredicted RBP10.28□□□□□ -0.76
TCOF1-205ENST00000439160 Q9UFV3 132 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 FUT9Q9Y231 359 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 TRBV23-1A0A0A0MS06 115 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 SMIM17P0DL12 118 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 EGR1P18146 543 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 TPPP2P59282 170 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 PMS2P11Q13670 270 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 FA2HQ7L5A8 372 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 WDFY1Q8IWB7 410 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 ZNF383Q8NA42 475 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 DNAJC4Q9NNZ3 241 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 ORM1P02763 201 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 CSN3P07498 182 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 NTF4P34130 210 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 SUPT4H1P63272 117 aaKnown RBP10.28□□□□□ -0.76
TCOF1-205ENST00000439160 DTX1Q86Y01 620 aa10.28□□□□□ -0.76
TCOF1-205ENST00000439160 RCC1LQ96I51 464 aaKnown RBP10.28□□□□□ -0.76
TCOF1-205ENST00000439160 PIEZO2Q9H5I5 2752 aa10.27□□□□□ -0.76
TCOF1-205ENST00000439160 ZNF324BQ6AW86 544 aaPredicted RBP10.27□□□□□ -0.76
TCOF1-205ENST00000439160 NABP2Q9BQ15 211 aa10.27□□□□□ -0.76
TCOF1-205ENST00000439160 METRNQ9UJH8 293 aa10.27□□□□□ -0.76
TCOF1-205ENST00000439160 A0A087X0M5 115 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 A0A1B0GX30 115 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 FOXH1O75593 365 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 OR2J3O76001 311 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 MOSP00540 346 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 LOXL3P58215 753 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 PCSK4Q6UW60 755 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 STPG3Q8N7X2 389 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 NEU4Q8WWR8 484 aaPredicted RBP10.27□□□□□ -0.77
TCOF1-205ENST00000439160 SGK494Q96LW2 274 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 ZMAT5Q9UDW3 170 aaKnown RBP10.27□□□□□ -0.77
TCOF1-205ENST00000439160 PGPA6NDG6 321 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 ZNF253O75346 499 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 CRISP2P16562 243 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 MPZP25189 248 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 IER3P46695 156 aa10.27□□□□□ -0.77
TCOF1-205ENST00000439160 RPL29P47914 159 aaKnown RBP10.27□□□□□ -0.77
TCOF1-205ENST00000439160 FAM209BQ5JX69 171 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms