RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 THBS3P49746 956 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 BLCAPP62952 87 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 ZNF345Q14585 488 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 TMEM187Q14656 261 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 CXorf66Q5JRM2 361 aaPredicted RBP7.39□□□□□ -1.23
USP4-202ENST00000351842 LIAT1Q6ZQX7 453 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 Q6ZRM9 215 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 TMUB2Q71RG4 321 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 LGI3Q8N145 548 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 BEND2Q8NDZ0 799 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 ST6GALNAC6Q969X2 333 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 ZNF48Q96MX3 618 aaPredicted RBP7.39□□□□□ -1.23
USP4-202ENST00000351842 TMEM140Q9NV12 185 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 SIGLEC9Q9Y336 463 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 WSB1Q9Y6I7 421 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 S4R3C0 116 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 L7N2F9 121 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 CLN5O75503 358 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 ECSCRQ19T08 205 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 ZNF833PQ6ZTB9 187 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 OR4A16Q8NH70 328 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 AKR1E2Q96JD6 320 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 TMEM68Q96MH6 324 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 NCOR1P1Q9H4R4 102 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 LINC00574Q9H8X3 128 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 ZNF355PQ9NSJ1 428 aa7.39□□□□□ -1.23
USP4-202ENST00000351842 PRSS47A8MTI9 375 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 ODF3BA8MYP8 253 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 CD5LO43866 347 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 DUS4LO95620 317 aaKnown RBP7.38□□□□□ -1.23
USP4-202ENST00000351842 IGKV1-5P01602 117 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 GATA3P23771 443 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 SURF2Q15527 256 aaPredicted RBP7.38□□□□□ -1.23
USP4-202ENST00000351842 TUSC1Q2TAM9 212 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 OR4A47Q6IF82 309 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 Q6ZS46 218 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 LCNL1Q6ZST4 164 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 SELENOHQ8IZQ5 122 aaKnown RBP7.38□□□□□ -1.23
USP4-202ENST00000351842 KIR3DL3Q8N743 410 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 LINC00052Q96N35 136 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 KIAA1456Q9P272 454 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 FXYD6-FXYD2A0A087WZ82 144 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 TRAV14DV4A0A0A6YYC5 116 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 KRBOX1C9JBD0 128 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 PRH1P02810 166 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 OR9G9P0C7N8 305 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 FAM106CPP0CH98 169 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 UCP3P55916 312 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 CCDC144NLQ6NUI1 221 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 CLRN3Q8NCR9 226 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 OR10A7Q8NGE5 316 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 OR10W1Q8NGF6 305 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 OR4C13Q8NGP0 309 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 GPR146Q96CH1 333 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 MALSU1Q96EH3 234 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 PARP11Q9NR21 331 aa7.38□□□□□ -1.23
USP4-202ENST00000351842 SORL1Q92673 2214 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 LINC01548A6NM66 108 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 CEBPZOSA8MTT3 80 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 H0Y980 276 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 SSSCA1O60232 199 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 NQO2P16083 231 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 NUP62P37198 522 aaPredicted RBP7.37□□□□□ -1.23
USP4-202ENST00000351842 ECI1P42126 302 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 C1orf122Q6ZSJ8 110 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 ZNF329Q86UD4 541 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 SLC25A33Q9BSK2 321 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 TET2Q6N021 2002 aaPredicted RBP7.37□□□□□ -1.23
USP4-202ENST00000351842 A0A087X0M5 115 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 A0A1B0GX30 115 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 KHDC1LQ5JSQ8 128 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 GSG1LQ6UXU4 331 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 ZNF66Q6ZN08 573 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 MITD1Q8WV92 249 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 PINX1Q96BK5 328 aaKnown RBP7.37□□□□□ -1.23
USP4-202ENST00000351842 NOL4LQ96MY1 436 aaPredicted RBP7.37□□□□□ -1.23
USP4-202ENST00000351842 QTRT1Q9BXR0 403 aaKnown RBP7.37□□□□□ -1.23
USP4-202ENST00000351842 GAB2Q9UQC2 676 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 FAM181BA6NEQ2 426 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 MOSP00540 346 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 RBP4P02753 201 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 CAV2P51636 162 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 OR5M8Q8NGP6 311 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 TMUB1Q9BVT8 246 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 COMMD5Q9GZQ3 224 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 SLC25A32Q9H2D1 315 aa7.37□□□□□ -1.23
USP4-202ENST00000351842 E7EUB6 86 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 LRRC75BQ2VPJ9 315 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 KCNRGQ8N5I3 272 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 TMEM217Q8N7C4 229 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 OR5T1Q8NG75 326 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 OR5AN1Q8NGI8 311 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 OR2T10Q8NGZ9 312 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 PHYHIPLQ96FC7 376 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 ZNF430Q9H8G1 570 aaPredicted RBP7.36□□□□□ -1.23
USP4-202ENST00000351842 UNKLQ9H9P5 680 aaKnown RBP7.36□□□□□ -1.23
USP4-202ENST00000351842 RNF222A6NCQ9 220 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 J3QLI3 93 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 CDS2O95674 445 aa7.36□□□□□ -1.23
USP4-202ENST00000351842 HPRT1P00492 218 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms