RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ADIRFQ15847 76 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 ZNF439Q8NDP4 499 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 NUP37Q8NFH4 326 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 OR52E5Q8NH55 327 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 FAM216AQ8WUB2 273 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 PATZ1Q9HBE1 687 aaKnown RBP15.9■□□□□ 0.14
COL9A3-201ENST00000343916 NDUFB7P17568 137 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 GAMTQ14353 236 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 ADIPOQQ15848 244 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 MS4A5Q9H3V2 200 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 IDI2-AS1Q9NZ38 188 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 RELNP78509 3460 aa15.9■□□□□ 0.14
COL9A3-201ENST00000343916 PRSS46E5RG02 174 aa15.89■□□□□ 0.13
COL9A3-201ENST00000343916 KIR2DS2P43631 304 aa15.89■□□□□ 0.13
COL9A3-201ENST00000343916 ACOT6Q3I5F7 207 aaPredicted RBP15.89■□□□□ 0.13
COL9A3-201ENST00000343916 PARLQ9H300 379 aa15.89■□□□□ 0.13
COL9A3-201ENST00000343916 NCOR1P1Q9H4R4 102 aa15.89■□□□□ 0.13
COL9A3-201ENST00000343916 C15orf61A6NNL5 157 aa15.89■□□□□ 0.13
COL9A3-201ENST00000343916 CLDN34H7C241 214 aa15.89■□□□□ 0.13
COL9A3-201ENST00000343916 THBDP07204 575 aa15.89■□□□□ 0.13
COL9A3-201ENST00000343916 HIST1H1BP16401 226 aaKnown RBP15.89■□□□□ 0.13
COL9A3-201ENST00000343916 RPP30P78346 268 aaKnown RBP15.89■□□□□ 0.13
COL9A3-201ENST00000343916 PRR30Q53SZ7 412 aaPredicted RBP15.89■□□□□ 0.13
COL9A3-201ENST00000343916 GFRALQ6UXV0 394 aa15.89■□□□□ 0.13
COL9A3-201ENST00000343916 OR13D1Q8NGV5 346 aa15.89■□□□□ 0.13
COL9A3-201ENST00000343916 ZCCHC14Q8WYQ9 949 aaKnown RBP15.89■□□□□ 0.13
COL9A3-201ENST00000343916 ITGB1BP1O14713 200 aa15.88■□□□□ 0.13
COL9A3-201ENST00000343916 HINT2Q9BX68 163 aa15.88■□□□□ 0.13
COL9A3-201ENST00000343916 GAB2Q9UQC2 676 aa15.88■□□□□ 0.13
COL9A3-201ENST00000343916 ELOA3CA0A087WX78 387 aaPredicted RBP15.88■□□□□ 0.13
COL9A3-201ENST00000343916 OPN1MWP04001 364 aa15.88■□□□□ 0.13
COL9A3-201ENST00000343916 IGKV1-16P04430 117 aa15.88■□□□□ 0.13
COL9A3-201ENST00000343916 OPN1MW2P0DN77 364 aa15.88■□□□□ 0.13
COL9A3-201ENST00000343916 OPN1MW3P0DN78 364 aa15.88■□□□□ 0.13
COL9A3-201ENST00000343916 COL8A2P25067 703 aa15.88■□□□□ 0.13
COL9A3-201ENST00000343916 PDLIM3Q53GG5 364 aaPredicted RBP15.88■□□□□ 0.13
COL9A3-201ENST00000343916 MGST2Q99735 147 aa15.88■□□□□ 0.13
COL9A3-201ENST00000343916 RAB9BQ9NP90 201 aa15.88■□□□□ 0.13
COL9A3-201ENST00000343916 NAT8Q9UHE5 227 aa15.88■□□□□ 0.13
COL9A3-201ENST00000343916 KBTBD11O94819 623 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 THBS3P49746 956 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 UBE2G2P60604 165 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 TMEM241Q24JQ0 296 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 TEX36Q5VZQ5 186 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 MIC13Q5XKP0 118 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 CYP2G1PQ6ZSU1 146 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 PRO1933Q9H354 126 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 MANBALQ9NQG1 85 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 C17orf100A8MU93 164 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 NHLH1Q02575 133 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.87■□□□□ 0.13
COL9A3-201ENST00000343916 RND1Q92730 232 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 C14orf144Q96I85 54 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 TMEM242Q9NWH2 141 aa15.87■□□□□ 0.13
COL9A3-201ENST00000343916 TMEM250H0YL14 139 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 RND2P52198 227 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 UNQ6494/PRO21346Q6UXR6 183 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 OR51G1Q8NGK1 321 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 SSMEM1Q8WWF3 244 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 C1orf159Q96HA4 380 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 DIRC2Q96SL1 478 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 TMEM14BQ9NUH8 114 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 RPUSD1Q9UJJ7 312 aaKnown RBP15.86■□□□□ 0.13
COL9A3-201ENST00000343916 FCN3O75636 299 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 CT45A6P0DMU7 189 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 CT45A5P0DMU8 189 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 CT45A7P0DMV0 189 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 TNFRSF1AP19438 455 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 RPL23P62829 140 aaKnown RBP15.86■□□□□ 0.13
COL9A3-201ENST00000343916 ARSJQ5FYB0 599 aaPredicted RBP15.86■□□□□ 0.13
COL9A3-201ENST00000343916 NECAP1Q8NC96 275 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 GGTLC1Q9BX51 225 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 SLC25A10Q9UBX3 287 aaPredicted RBP15.86■□□□□ 0.13
COL9A3-201ENST00000343916 POLEQ07864 2286 aa15.86■□□□□ 0.13
COL9A3-201ENST00000343916 ARFGEF3Q5TH69 2177 aa15.85■□□□□ 0.13
COL9A3-201ENST00000343916 TRGV8A0A0C4DH27 118 aa15.85■□□□□ 0.13
COL9A3-201ENST00000343916 A0A1W2PPV4 95 aa15.85■□□□□ 0.13
COL9A3-201ENST00000343916 SRRM4A7MD48 611 aaKnown RBP15.85■□□□□ 0.13
COL9A3-201ENST00000343916 C11orf94C9JXX5 98 aa15.85■□□□□ 0.13
COL9A3-201ENST00000343916 CCL3L1P16619 93 aa15.85■□□□□ 0.13
COL9A3-201ENST00000343916 FOXC1Q12948 553 aa15.85■□□□□ 0.13
COL9A3-201ENST00000343916 PACRGQ96M98 296 aaPredicted RBP15.85■□□□□ 0.13
COL9A3-201ENST00000343916 ELOVL5Q9NYP7 299 aa15.85■□□□□ 0.13
COL9A3-201ENST00000343916 PXMP4Q9Y6I8 212 aa15.85■□□□□ 0.13
COL9A3-201ENST00000343916 TLN1Q9Y490 2541 aaKnown RBP15.85■□□□□ 0.13
COL9A3-201ENST00000343916 NPPCP23582 126 aa15.85■□□□□ 0.13
COL9A3-201ENST00000343916 HSPE1P61604 102 aaKnown RBP15.85■□□□□ 0.13
COL9A3-201ENST00000343916 BSXQ3C1V8 233 aa15.85■□□□□ 0.13
COL9A3-201ENST00000343916 SLC25A48Q6ZT89 311 aaKnown RBP15.85■□□□□ 0.13
COL9A3-201ENST00000343916 SLC24A4Q8NFF2 622 aa15.85■□□□□ 0.13
COL9A3-201ENST00000343916 CCL17Q92583 94 aa15.85■□□□□ 0.13
COL9A3-201ENST00000343916 SAP30LQ9HAJ7 183 aa15.85■□□□□ 0.13
COL9A3-201ENST00000343916 FOXA2Q9Y261 457 aaPredicted RBP15.85■□□□□ 0.13
COL9A3-201ENST00000343916 TMPRSS3P57727 454 aa15.84■□□□□ 0.13
COL9A3-201ENST00000343916 C16orf82Q7Z2V1 217 aa15.84■□□□□ 0.13
COL9A3-201ENST00000343916 SPACA3Q8IXA5 215 aa15.84■□□□□ 0.13
COL9A3-201ENST00000343916 hADV38S2A0JD32 116 aa15.84■□□□□ 0.13
COL9A3-201ENST00000343916 PHOX2AO14813 284 aa15.84■□□□□ 0.13
COL9A3-201ENST00000343916 CA2P00918 260 aa15.84■□□□□ 0.13
COL9A3-201ENST00000343916 NPY1RP25929 384 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms