RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 TBR1Q16650 682 aa11.05□□□□□ -0.64
USP47-202ENST00000339865 HOGA1Q86XE5 327 aa11.05□□□□□ -0.64
USP47-202ENST00000339865 A6NNC1 897 aa11.05□□□□□ -0.64
USP47-202ENST00000339865 DNM1P46Q6ZS02 220 aa11.05□□□□□ -0.64
USP47-202ENST00000339865 RTN4RL2Q86UN3 420 aa11.05□□□□□ -0.64
USP47-202ENST00000339865 ORMDL3Q8N138 153 aa11.05□□□□□ -0.64
USP47-202ENST00000339865 ZNF625Q96I27 306 aaPredicted RBP11.05□□□□□ -0.64
USP47-202ENST00000339865 MS4A5Q9H3V2 200 aa11.05□□□□□ -0.64
USP47-202ENST00000339865 NPPCP23582 126 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 LRRC61Q9BV99 259 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 A0A1W2PRS3 328 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 LINC00587B1AMM8 73 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 GZMBP10144 247 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 ESDP10768 282 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 CHST5Q9GZS9 411 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 EPDR1Q9UM22 224 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 PCDH15Q96QU1 1955 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 HIGD1CA8MV81 97 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 NUTF2P61970 127 aaKnown RBP11.04□□□□□ -0.64
USP47-202ENST00000339865 ZNF79Q15937 498 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 CD300LDQ6UXZ3 194 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 LINC00615Q96LM1 132 aaPredicted RBP11.04□□□□□ -0.64
USP47-202ENST00000339865 IGHV3OR16-13A0A075B7E8 117 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 IGHV3-74A0A0B4J1X5 117 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 CACNA1HO95180 2353 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 VSIG8P0DPA2 414 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 ATP5G2Q06055 141 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 PDFQ9HBH1 243 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 ERVH48-1M5A8F1 160 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 RNASE4P34096 147 aaKnown RBP11.04□□□□□ -0.64
USP47-202ENST00000339865 TPTE2P1Q5T6R2 138 aa11.04□□□□□ -0.64
USP47-202ENST00000339865 COL11A1P12107 1806 aaPredicted RBP11.04□□□□□ -0.64
USP47-202ENST00000339865 PPIAL4EA0A075B759 164 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 PPIAL4FP0DN26 164 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 SSBP2P81877 361 aaPredicted RBP11.03□□□□□ -0.64
USP47-202ENST00000339865 GTSCR1Q86UQ5 136 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 TMEM30AQ9NV96 361 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 PPIAL4AQ9Y536 164 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 KBTBD11-OT1A0A1B0GTJ5 212 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 DOCK2Q92608 1830 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 DSPPQ9NZW4 1301 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 J3QT63 122 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 TMEM86BQ8N661 226 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 CCL13Q99616 98 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 TOMM40O96008 361 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 TSPAN7P41732 249 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 IL36BQ9NZH7 164 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 ERG28Q9UKR5 140 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 NCR2O95944 276 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 MAGEA5P43359 124 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 JPT2Q9H910 190 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 DANCRP0C864 163 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 C9orf153Q5TBE3 101 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 TMEM42Q69YG0 159 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 ABHD12Q8N2K0 398 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 NBASA2RRP1 2371 aa11.03□□□□□ -0.64
USP47-202ENST00000339865 TMEM222Q9H0R3 208 aa11.02□□□□□ -0.64
USP47-202ENST00000339865 SF3B6Q9Y3B4 125 aaKnown RBP11.02□□□□□ -0.64
USP47-202ENST00000339865 Q71RC1 249 aaPredicted RBP11.02□□□□□ -0.64
USP47-202ENST00000339865 LRTM2Q8N967 370 aa11.02□□□□□ -0.64
USP47-202ENST00000339865 TRAV30A0A087WSZ9 112 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 CA11O75493 328 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 MOSP00540 346 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 C1QL3Q5VWW1 255 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 LEAP2Q969E1 77 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 CXCL16Q9H2A7 254 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 SEMA5BQ9P283 1151 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 PIK3C2AO00443 1686 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 MARCH11A6NNE9 402 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 DPM2O94777 84 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 IGHV3-23P01764 117 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 ZG16O60844 167 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 SPINK8P0C7L1 97 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 GGTLC1Q9BX51 225 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 VWC2LB2RUY7 222 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 ITGB1BP1O14713 200 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 CT62P0C5K7 136 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 EVI2AP22794 236 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 GPX4P36969 197 aaPredicted RBP11.02□□□□□ -0.65
USP47-202ENST00000339865 IFI27P40305 119 aaPredicted RBP11.02□□□□□ -0.65
USP47-202ENST00000339865 ASIPP42127 132 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 PRDM13Q9H4Q3 707 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 TRGV2A0A075B6R0 118 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 EREGO14944 169 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 C17orf99Q6UX52 265 aa11.02□□□□□ -0.65
USP47-202ENST00000339865 LINC00158P58513 81 aa11.01□□□□□ -0.65
USP47-202ENST00000339865 CEACAM21Q3KPI0 293 aa11.01□□□□□ -0.65
USP47-202ENST00000339865 PNKDQ8N490 385 aa11.01□□□□□ -0.65
USP47-202ENST00000339865 UCN2Q96RP3 112 aa11.01□□□□□ -0.65
USP47-202ENST00000339865 ZNF479Q96JC4 524 aa11.01□□□□□ -0.65
USP47-202ENST00000339865 GP6Q9HCN6 339 aa11.01□□□□□ -0.65
USP47-202ENST00000339865 COL14A1Q05707 1796 aaKnown RBP11.01□□□□□ -0.65
USP47-202ENST00000339865 VAX1Q5SQQ9 334 aa11.01□□□□□ -0.65
USP47-202ENST00000339865 WDYHV1Q96HA8 205 aa11.01□□□□□ -0.65
USP47-202ENST00000339865 G6PC2Q9NQR9 355 aa11.01□□□□□ -0.65
USP47-202ENST00000339865 CALYQ9NYX4 217 aa11.01□□□□□ -0.65
USP47-202ENST00000339865 CD33P20138 364 aa11.01□□□□□ -0.65
USP47-202ENST00000339865 P2RY6Q15077 328 aa11.01□□□□□ -0.65
USP47-202ENST00000339865 SCO2A0A1W2PP80 73 aa11.01□□□□□ -0.65
USP47-202ENST00000339865 INS-IGF2F8WCM5 200 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms