RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 OTX1P32242 354 aaPredicted RBP16.3■□□□□ 0.2
USP48-201ENST00000308271 FOXL1Q12952 345 aa16.3■□□□□ 0.2
USP48-201ENST00000308271 GRAMD2BQ96HH9 432 aa16.3■□□□□ 0.2
USP48-201ENST00000308271 PEF1Q9UBV8 284 aaKnown RBP16.3■□□□□ 0.2
USP48-201ENST00000308271 CD55P08174 381 aa16.3■□□□□ 0.2
USP48-201ENST00000308271 HBBP68871 147 aa16.3■□□□□ 0.2
USP48-201ENST00000308271 ZNF664Q8N3J9 261 aa16.3■□□□□ 0.2
USP48-201ENST00000308271 PLAUP00749 431 aa16.3■□□□□ 0.2
USP48-201ENST00000308271 GZMBP10144 247 aa16.3■□□□□ 0.2
USP48-201ENST00000308271 PLP1P60201 277 aa16.3■□□□□ 0.2
USP48-201ENST00000308271 FAM222BQ8WU58 562 aa16.3■□□□□ 0.2
USP48-201ENST00000308271 SLC25A33Q9BSK2 321 aa16.3■□□□□ 0.2
USP48-201ENST00000308271 DCAF16Q9NXF7 216 aa16.3■□□□□ 0.2
USP48-201ENST00000308271 DLEU1O43261 78 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 RPP25LQ8N5L8 163 aaKnown RBP16.29■□□□□ 0.2
USP48-201ENST00000308271 RFPL3SP0C7P2 107 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 SMIM17P0DL12 118 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 CLDN18P56856 261 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 FAM90A2PQ658T7 463 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 OR10AG1Q8NH19 301 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 SCNM1Q9BWG6 230 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 MRPL37Q9BZE1 423 aaKnown RBP16.29■□□□□ 0.2
USP48-201ENST00000308271 TNFRSF19Q9NS68 423 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 TEX38Q6PEX7 206 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 HSPB7Q9UBY9 170 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 IGKV1-27A0A075B6S5 117 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 COX7A1P24310 79 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 ACSF3Q4G176 576 aaPredicted RBP16.29■□□□□ 0.2
USP48-201ENST00000308271 SAP25Q8TEE9 199 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 NABP1Q96AH0 204 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 WDR83OSQ9Y284 106 aa16.29■□□□□ 0.2
USP48-201ENST00000308271 CACNA1EQ15878 2313 aa16.28■□□□□ 0.2
USP48-201ENST00000308271 NCBP2LA6PVI3 153 aaKnown RBP16.28■□□□□ 0.2
USP48-201ENST00000308271 GNB2P62879 340 aa16.28■□□□□ 0.2
USP48-201ENST00000308271 CLDN16Q9Y5I7 305 aa16.28■□□□□ 0.2
USP48-201ENST00000308271 ORM1P02763 201 aa16.28■□□□□ 0.2
USP48-201ENST00000308271 RPL27AP46776 148 aaKnown RBP16.28■□□□□ 0.2
USP48-201ENST00000308271 REG1BP48304 166 aa16.28■□□□□ 0.2
USP48-201ENST00000308271 PLPPR1Q8TBJ4 325 aa16.28■□□□□ 0.2
USP48-201ENST00000308271 INSIG2Q9Y5U4 225 aa16.28■□□□□ 0.2
USP48-201ENST00000308271 OR4C46A6NHA9 309 aa16.28■□□□□ 0.2
USP48-201ENST00000308271 FAM19A2Q8N3H0 131 aa16.28■□□□□ 0.2
USP48-201ENST00000308271 OCC1Q8TAD7 63 aa16.28■□□□□ 0.2
USP48-201ENST00000308271 TRAV24A0A0B4J272 114 aa16.27■□□□□ 0.2
USP48-201ENST00000308271 LOC389332A0A1B0GUA5 103 aa16.27■□□□□ 0.2
USP48-201ENST00000308271 CEACAM3P40198 252 aa16.27■□□□□ 0.2
USP48-201ENST00000308271 Q1RN00 199 aa16.27■□□□□ 0.2
USP48-201ENST00000308271 ACTL10Q5JWF8 245 aa16.27■□□□□ 0.2
USP48-201ENST00000308271 FAM131CQ96AQ9 280 aa16.27■□□□□ 0.2
USP48-201ENST00000308271 CDX2Q99626 313 aaPredicted RBP16.27■□□□□ 0.2
USP48-201ENST00000308271 TMSB15BA0A087X1C1 80 aa16.27■□□□□ 0.2
USP48-201ENST00000308271 MC5RP33032 325 aa16.27■□□□□ 0.2
USP48-201ENST00000308271 TBR1Q16650 682 aa16.27■□□□□ 0.2
USP48-201ENST00000308271 IMMP1LQ96LU5 166 aa16.27■□□□□ 0.2
USP48-201ENST00000308271 TMEM30BQ3MIR4 351 aa16.27■□□□□ 0.19
USP48-201ENST00000308271 SMIM12Q96EX1 92 aa16.27■□□□□ 0.19
USP48-201ENST00000308271 EAF1Q96JC9 268 aaPredicted RBP16.27■□□□□ 0.19
USP48-201ENST00000308271 SLC25A10Q9UBX3 287 aaPredicted RBP16.27■□□□□ 0.19
USP48-201ENST00000308271 IZUMO1RA6ND01 250 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 NUDT3O95989 172 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 IGFBP2P18065 325 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 GNB1LQ9BYB4 327 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 OSTCQ9NRP0 149 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 IDI2-AS1Q9NZ38 188 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 TRPM7Q96QT4 1865 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 A8MWP6 167 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 ZNF324O75467 553 aaPredicted RBP16.26■□□□□ 0.19
USP48-201ENST00000308271 PMS2CLQ68D20 193 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 ASCL5Q7RTU5 278 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 LINC01551Q86U37 167 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 CCL13Q99616 98 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 ALKBH7Q9BT30 221 aaPredicted RBP16.26■□□□□ 0.19
USP48-201ENST00000308271 LINC00614P0C842 121 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 MRPL52Q86TS9 123 aaKnown RBP16.26■□□□□ 0.19
USP48-201ENST00000308271 ONECUT1Q9UBC0 465 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 PGPEP1LA6NFU8 196 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 MKRN2OSH3BPM6 223 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 NIT1Q86X76 327 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 MYOZ3Q8TDC0 251 aa16.26■□□□□ 0.19
USP48-201ENST00000308271 C5orf63A6NC05 138 aa16.25■□□□□ 0.19
USP48-201ENST00000308271 WNT9BO14905 357 aa16.25■□□□□ 0.19
USP48-201ENST00000308271 FOXA3P55318 350 aaPredicted RBP16.25■□□□□ 0.19
USP48-201ENST00000308271 ACP7Q6ZNF0 438 aa16.25■□□□□ 0.19
USP48-201ENST00000308271 HEATR5AQ86XA9 2040 aa16.25■□□□□ 0.19
USP48-201ENST00000308271 EPOPA6NHQ4 379 aa16.25■□□□□ 0.19
USP48-201ENST00000308271 MNX1P50219 401 aaPredicted RBP16.25■□□□□ 0.19
USP48-201ENST00000308271 MRPL14Q6P1L8 145 aaKnown RBP16.25■□□□□ 0.19
USP48-201ENST00000308271 ZNF497Q6ZNH5 498 aa16.25■□□□□ 0.19
USP48-201ENST00000308271 TTC28Q96AY4 2481 aa16.25■□□□□ 0.19
USP48-201ENST00000308271 C1orf147Q96MC9 270 aaPredicted RBP16.25■□□□□ 0.19
USP48-201ENST00000308271 AP5S1Q9NUS5 200 aa16.25■□□□□ 0.19
USP48-201ENST00000308271 UFC1Q9Y3C8 167 aa16.25■□□□□ 0.19
USP48-201ENST00000308271 TCF20Q9UGU0 1960 aaKnown RBP16.25■□□□□ 0.19
USP48-201ENST00000308271 FBLL1A6NHQ2 334 aaKnown RBP16.25■□□□□ 0.19
USP48-201ENST00000308271 PATE3B3GLJ2 98 aa16.25■□□□□ 0.19
USP48-201ENST00000308271 ITLN1Q8WWA0 313 aa16.25■□□□□ 0.19
USP48-201ENST00000308271 ZNF714Q96N38 554 aa16.25■□□□□ 0.19
USP48-201ENST00000308271 GUCD1Q96NT3 240 aa16.25■□□□□ 0.19
USP48-201ENST00000308271 TMEM189A5PLL7 270 aa16.24■□□□□ 0.19
USP48-201ENST00000308271 TIMP3P35625 211 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms