RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TRAV38-1A0A0B4J264 116 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 MARCH11A6NNE9 402 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 SOCS1O15524 211 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 APOBEC3DQ96AK3 386 aaPredicted RBP5.49□□□□□ -1.53
VPS35-201ENST00000299138 UBE2ZQ9H832 354 aaPredicted RBP5.49□□□□□ -1.53
VPS35-201ENST00000299138 CYB561P49447 251 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 LOXL3P58215 753 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 RBPJQ06330 500 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 CEACAM16Q2WEN9 425 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 PQLC2Q6ZP29 291 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 PRDM14Q9GZV8 571 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 TOMM7Q9P0U1 55 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 SLC25A20O43772 301 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 HLA-DQA1P01909 254 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 REG1AP05451 166 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 PRSS12P56730 875 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 FOXL1Q12952 345 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 MMDQ15546 238 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 A0A1W2PNR3 127 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 IGLV3-1P01715 115 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 LINC00271P0C7V0 271 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 GPX4P36969 197 aaPredicted RBP5.49□□□□□ -1.53
VPS35-201ENST00000299138 TMEM42Q69YG0 159 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 FAM19A2Q8N3H0 131 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 NCOR1P1Q9H4R4 102 aa5.49□□□□□ -1.53
VPS35-201ENST00000299138 TMEM30CPA0ZSE6 113 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 SSR4P51571 173 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 NUTF2P61970 127 aaKnown RBP5.48□□□□□ -1.53
VPS35-201ENST00000299138 RTP5Q14D33 572 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 ZNF56Q15929 161 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 CLEC2AQ6UVW9 174 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 DPH3P1Q9H4G8 78 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 A0A1B0GWJ7 208 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 NKX2-8O15522 239 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 PRB2P02812 416 aaPredicted RBP5.48□□□□□ -1.53
VPS35-201ENST00000299138 PRB1P04280 392 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 CD38P28907 300 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 KIR2DS2P43631 304 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 OR3A4PP47883 348 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 DSCR4P56555 118 aaPredicted RBP5.48□□□□□ -1.53
VPS35-201ENST00000299138 CCL7P80098 99 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 TRA2AQ13595 282 aaKnown RBP eCLIP5.48□□□□□ -1.53
VPS35-201ENST00000299138 C1orf194Q5T5A4 169 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 RASL11AQ6T310 242 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 C17orf82Q86X59 251 aaPredicted RBP5.48□□□□□ -1.53
VPS35-201ENST00000299138 RND1Q92730 232 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 ZNF625Q96I27 306 aaPredicted RBP5.48□□□□□ -1.53
VPS35-201ENST00000299138 RASL11BQ9BPW5 248 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 FZR1Q9UM11 496 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 MGST3O14880 152 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 CBLN1P23435 193 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 PDLIM4P50479 330 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 FOXF1Q12946 379 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 FAM74A4Q5TZK3 123 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 GOLT1AQ6ZVE7 132 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 OCIAD1Q9NX40 245 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 MRPS18CQ9Y3D5 142 aaKnown RBP5.48□□□□□ -1.53
VPS35-201ENST00000299138 LHFPL6Q9Y693 200 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 TRIP12Q14669 1992 aaPredicted RBP5.48□□□□□ -1.53
VPS35-201ENST00000299138 A0A1B0GTH9 108 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 PRSS47A8MTI9 375 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 TMPRSS2O15393 492 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 SPRY3O43610 288 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 NDUFC2O95298 119 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 PSG1P11464 419 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 CDAP32320 146 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 RRN3P1Q2M238 152 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 PYY3Q5JQD4 70 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 VKORC1L1Q8N0U8 176 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 GNRHR2Q96P88 292 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 PAXXQ9BUH6 204 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 ZNF576Q9H609 170 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 GPR27Q9NS67 375 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 TRAV2A0A0B4J234 112 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 DCAF10Q5QP82 559 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 SYT8Q8NBV8 401 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 TMEM54Q969K7 222 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 MS4A5Q9H3V2 200 aa5.48□□□□□ -1.53
VPS35-201ENST00000299138 GGTLC3B5MD39 225 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 CDK2AP2O75956 126 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 RRADP55042 308 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 FOXA3P55318 350 aaPredicted RBP5.47□□□□□ -1.53
VPS35-201ENST00000299138 RAC3P60763 192 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 GPR82Q96P67 336 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 IP6K3Q96PC2 410 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 IL36RNQ9UBH0 155 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 DOCK3Q8IZD9 2030 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 ITGB1BP1O14713 200 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 DLEU1O43261 78 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 PPIHO43447 177 aaKnown RBP5.47□□□□□ -1.53
VPS35-201ENST00000299138 NGFP01138 241 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 CD33P20138 364 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 NPC2P61916 151 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 CENPVQ7Z7K6 275 aaPredicted RBP5.47□□□□□ -1.53
VPS35-201ENST00000299138 NRSN2Q9GZP1 204 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 MBNL3Q9NUK0 354 aaKnown RBP5.47□□□□□ -1.53
VPS35-201ENST00000299138 SLC25A10Q9UBX3 287 aaPredicted RBP5.47□□□□□ -1.53
VPS35-201ENST00000299138 GAGE12JA6NER3 117 aa5.47□□□□□ -1.53
VPS35-201ENST00000299138 NRG2O14511 850 aaPredicted RBP5.47□□□□□ -1.53
VPS35-201ENST00000299138 EML2O95834 649 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms