RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 KBTBD11O94819 623 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 CA2P00918 260 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 OR10J4P0C629 311 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 RELBQ01201 579 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 TIMM23BQ5SRD1 257 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 C1orf162Q8NEQ5 155 aaPredicted RBP13.69□□□□□ -0.22
VPS54-201ENST00000272322 MGST2Q99735 147 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 RYDENQ9NUL5 291 aaKnown RBP13.69□□□□□ -0.22
VPS54-201ENST00000272322 TP53TG5Q9Y2B4 290 aa13.69□□□□□ -0.22
VPS54-201ENST00000272322 IGHV3-21A0A0B4J1V1 117 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 GFRA3O60609 400 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 IGFBP2P18065 325 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 CDX1P47902 265 aaPredicted RBP13.68□□□□□ -0.22
VPS54-201ENST00000272322 B2MP61769 119 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 SLC35B1P78383 322 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 OR4X1Q8NH49 305 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 SRRM4A7MD48 611 aaKnown RBP13.68□□□□□ -0.22
VPS54-201ENST00000272322 PPP5D1E7EU14 171 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 LYNX1G3V0Z9 82 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 LYNX1P0DP58 116 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 IRF2P14316 349 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 CD40P25942 277 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 IGFL2Q6UWQ7 119 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 TCF23Q7RTU1 214 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 OR4P4Q8NGL7 312 aa13.68□□□□□ -0.22
VPS54-201ENST00000272322 NEIL1Q96FI4 390 aaPredicted RBP13.68□□□□□ -0.22
VPS54-201ENST00000272322 A0A087WWC5 75 aa13.67□□□□□ -0.22
VPS54-201ENST00000272322 SCO2A0A1W2PP80 73 aa13.67□□□□□ -0.22
VPS54-201ENST00000272322 GNB1P62873 340 aa13.67□□□□□ -0.22
VPS54-201ENST00000272322 C10orf55Q5SWW7 151 aa13.67□□□□□ -0.22
VPS54-201ENST00000272322 PFDN5Q99471 154 aa13.67□□□□□ -0.22
VPS54-201ENST00000272322 MBD3L4A6NDZ8 208 aaPredicted RBP13.67□□□□□ -0.22
VPS54-201ENST00000272322 MBD3L3A6NE82 208 aaPredicted RBP13.67□□□□□ -0.22
VPS54-201ENST00000272322 MBD3L5A6NJ08 208 aaPredicted RBP13.67□□□□□ -0.22
VPS54-201ENST00000272322 C1orf185Q5T7R7 199 aa13.67□□□□□ -0.22
VPS54-201ENST00000272322 MBD3L2Q8NHZ7 208 aaPredicted RBP13.67□□□□□ -0.22
VPS54-201ENST00000272322 IGFBPL1Q8WX77 278 aa13.67□□□□□ -0.22
VPS54-201ENST00000272322 SIRT7Q9NRC8 400 aa13.67□□□□□ -0.22
VPS54-201ENST00000272322 ZNF705GA8MUZ8 300 aaPredicted RBP13.67□□□□□ -0.22
VPS54-201ENST00000272322 OR4A8P0C604 315 aa13.67□□□□□ -0.22
VPS54-201ENST00000272322 HTD2P86397 168 aa13.67□□□□□ -0.22
VPS54-201ENST00000272322 KDF1Q8NAX2 398 aaPredicted RBP13.67□□□□□ -0.22
VPS54-201ENST00000272322 OR10A7Q8NGE5 316 aa13.67□□□□□ -0.22
VPS54-201ENST00000272322 ACY3Q96HD9 319 aa13.67□□□□□ -0.22
VPS54-201ENST00000272322 SEBOXQ9HB31 216 aaPredicted RBP13.67□□□□□ -0.22
VPS54-201ENST00000272322 JPT1Q9UK76 154 aa13.67□□□□□ -0.22
VPS54-201ENST00000272322 HOXB1P14653 301 aaPredicted RBP13.66□□□□□ -0.22
VPS54-201ENST00000272322 CD33P20138 364 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 CHRNB4P30926 498 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 SPCS3P61009 180 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 ATP6V1FQ16864 119 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 ARSJQ5FYB0 599 aaPredicted RBP13.66□□□□□ -0.22
VPS54-201ENST00000272322 ZNF320A2RRD8 509 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 SLC17A3O00476 420 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 REG1AP05451 166 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 NPY1RP25929 384 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 PNRC1Q12796 327 aaPredicted RBP13.66□□□□□ -0.22
VPS54-201ENST00000272322 C1QL4Q86Z23 238 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 MALSU1Q96EH3 234 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 WDR83OSQ9Y284 106 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 KBTBD11-OT1A0A1B0GTJ5 212 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 DVL1O14640 695 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 GAMTQ14353 236 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 CYP2G1PQ6ZSU1 146 aa13.66□□□□□ -0.22
VPS54-201ENST00000272322 CXorf65A6NEN9 183 aa13.65□□□□□ -0.22
VPS54-201ENST00000272322 J3QR06 171 aa13.65□□□□□ -0.22
VPS54-201ENST00000272322 PLAUP00749 431 aa13.65□□□□□ -0.22
VPS54-201ENST00000272322 BSPH1Q075Z2 132 aa13.65□□□□□ -0.22
VPS54-201ENST00000272322 FAM209BQ5JX69 171 aa13.65□□□□□ -0.22
VPS54-201ENST00000272322 OR4S2Q8NH73 311 aa13.65□□□□□ -0.22
VPS54-201ENST00000272322 YPEL1O60688 119 aa13.65□□□□□ -0.22
VPS54-201ENST00000272322 LGALS4P56470 323 aa13.65□□□□□ -0.22
VPS54-201ENST00000272322 RPL31P62899 125 aaKnown RBP13.65□□□□□ -0.22
VPS54-201ENST00000272322 C19orf35Q6ZS72 473 aa13.65□□□□□ -0.22
VPS54-201ENST00000272322 SLC24A4Q8NFF2 622 aa13.65□□□□□ -0.22
VPS54-201ENST00000272322 YPEL2Q96QA6 119 aa13.65□□□□□ -0.22
VPS54-201ENST00000272322 GGTLC1Q9BX51 225 aa13.65□□□□□ -0.22
VPS54-201ENST00000272322 SLC35D1Q9NTN3 355 aa13.65□□□□□ -0.22
VPS54-201ENST00000272322 XKRY2A2RUG3 117 aa13.65□□□□□ -0.23
VPS54-201ENST00000272322 A8MXE2 369 aa13.65□□□□□ -0.23
VPS54-201ENST00000272322 ENSAO43768 121 aaKnown RBP13.65□□□□□ -0.23
VPS54-201ENST00000272322 MBP02144 154 aa13.65□□□□□ -0.23
VPS54-201ENST00000272322 CCKARP32238 428 aa13.65□□□□□ -0.23
VPS54-201ENST00000272322 FOXC1Q12948 553 aa13.65□□□□□ -0.23
VPS54-201ENST00000272322 OR5I1Q13606 314 aa13.65□□□□□ -0.23
VPS54-201ENST00000272322 Q8N7P7 452 aa13.65□□□□□ -0.23
VPS54-201ENST00000272322 STPG3Q8N7X2 389 aa13.65□□□□□ -0.23
VPS54-201ENST00000272322 P2RX4Q99571 388 aa13.65□□□□□ -0.23
VPS54-201ENST00000272322 OR51B2Q9Y5P1 312 aa13.65□□□□□ -0.23
VPS54-201ENST00000272322 PHOX2AO14813 284 aa13.64□□□□□ -0.23
VPS54-201ENST00000272322 MZT1Q08AG7 82 aa13.64□□□□□ -0.23
VPS54-201ENST00000272322 LYPD2Q6UXB3 125 aa13.64□□□□□ -0.23
VPS54-201ENST00000272322 ZCCHC14Q8WYQ9 949 aaKnown RBP13.64□□□□□ -0.23
VPS54-201ENST00000272322 SGK494Q96LW2 274 aa13.64□□□□□ -0.23
VPS54-201ENST00000272322 TRBV20OR9-2A0A075B6H5 130 aa13.64□□□□□ -0.23
VPS54-201ENST00000272322 A0A0G2JNJ9 132 aa13.64□□□□□ -0.23
VPS54-201ENST00000272322 OR7C2O60412 319 aa13.64□□□□□ -0.23
VPS54-201ENST00000272322 MIR17HGQ75NE6 70 aa13.64□□□□□ -0.23
VPS54-201ENST00000272322 HIST3H2BBQ8N257 126 aa13.64□□□□□ -0.23
VPS54-201ENST00000272322 NHLRC2Q8NBF2 726 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms