RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 FAM103A1Q9BTL3 118 aaKnown RBP13.97□□□□□ -0.17
CLN3-247ENST00000636351 COMMD9Q9P000 198 aa13.97□□□□□ -0.17
CLN3-247ENST00000636351 TRAV41A0A0B4J266 112 aa13.96□□□□□ -0.17
CLN3-247ENST00000636351 G3V318 75 aa13.96□□□□□ -0.17
CLN3-247ENST00000636351 OR2A4O95047 310 aa13.96□□□□□ -0.17
CLN3-247ENST00000636351 HPRT1P00492 218 aa13.96□□□□□ -0.17
CLN3-247ENST00000636351 TAS2R31P59538 309 aa13.96□□□□□ -0.17
CLN3-247ENST00000636351 RND3P61587 244 aa13.96□□□□□ -0.17
CLN3-247ENST00000636351 ZNF45Q02386 682 aa13.96□□□□□ -0.17
CLN3-247ENST00000636351 PRSS8Q16651 343 aa13.96□□□□□ -0.17
CLN3-247ENST00000636351 DMBX1Q8NFW5 382 aa13.96□□□□□ -0.17
CLN3-247ENST00000636351 OR2A7Q96R45 310 aa13.96□□□□□ -0.17
CLN3-247ENST00000636351 HRASLSQ9HDD0 168 aa13.96□□□□□ -0.17
CLN3-247ENST00000636351 SLC2A8Q9NY64 477 aa13.96□□□□□ -0.17
CLN3-247ENST00000636351 FBXO7Q9Y3I1 522 aa13.96□□□□□ -0.17
CLN3-247ENST00000636351 ARPC1BO15143 372 aaKnown RBP13.95□□□□□ -0.18
CLN3-247ENST00000636351 MPPED1O15442 326 aa13.95□□□□□ -0.18
CLN3-247ENST00000636351 KBTBD11O94819 623 aa13.95□□□□□ -0.18
CLN3-247ENST00000636351 CTSDP07339 412 aaPredicted RBP13.95□□□□□ -0.18
CLN3-247ENST00000636351 RPA2P15927 270 aa13.95□□□□□ -0.18
CLN3-247ENST00000636351 NQO2P16083 231 aa13.95□□□□□ -0.18
CLN3-247ENST00000636351 LPAR6P43657 344 aa13.95□□□□□ -0.18
CLN3-247ENST00000636351 TMEM267Q0VDI3 215 aaPredicted RBP13.95□□□□□ -0.18
CLN3-247ENST00000636351 CXorf66Q5JRM2 361 aaPredicted RBP13.95□□□□□ -0.18
CLN3-247ENST00000636351 TEX38Q6PEX7 206 aa13.95□□□□□ -0.18
CLN3-247ENST00000636351 MMD2Q8IY49 270 aa13.95□□□□□ -0.18
CLN3-247ENST00000636351 COMMD1Q8N668 190 aa13.95□□□□□ -0.18
CLN3-247ENST00000636351 TCTEX1D1Q8N7M0 179 aa13.95□□□□□ -0.18
CLN3-247ENST00000636351 PHB2Q99623 299 aa13.95□□□□□ -0.18
CLN3-247ENST00000636351 ZNF430Q9H8G1 570 aaPredicted RBP13.95□□□□□ -0.18
CLN3-247ENST00000636351 PLEKHA2Q9HB19 425 aa13.95□□□□□ -0.18
CLN3-247ENST00000636351 ZNF580Q9UK33 172 aa13.95□□□□□ -0.18
CLN3-247ENST00000636351 NBEAL2Q6ZNJ1 2754 aa13.94□□□□□ -0.18
CLN3-247ENST00000636351 LINC00854A0A1B0GVQ3 168 aa13.94□□□□□ -0.18
CLN3-247ENST00000636351 A0A1W2PN81 502 aa13.94□□□□□ -0.18
CLN3-247ENST00000636351 SERPINE2P07093 398 aa13.94□□□□□ -0.18
CLN3-247ENST00000636351 IGLL1P15814 213 aa13.94□□□□□ -0.18
CLN3-247ENST00000636351 CD33P20138 364 aa13.94□□□□□ -0.18
CLN3-247ENST00000636351 CHRNA7P36544 502 aa13.94□□□□□ -0.18
CLN3-247ENST00000636351 SURF2Q15527 256 aaPredicted RBP13.94□□□□□ -0.18
CLN3-247ENST00000636351 BAK1Q16611 211 aa13.94□□□□□ -0.18
CLN3-247ENST00000636351 OR4A47Q6IF82 309 aa13.94□□□□□ -0.18
CLN3-247ENST00000636351 UNQ5815/PRO19632Q6UWF5 114 aa13.94□□□□□ -0.18
CLN3-247ENST00000636351 PUSL1Q8N0Z8 303 aaKnown RBP13.94□□□□□ -0.18
CLN3-247ENST00000636351 MRGPRFQ96AM1 343 aa13.94□□□□□ -0.18
CLN3-247ENST00000636351 SCGB3A2Q96PL1 93 aa13.94□□□□□ -0.18
CLN3-247ENST00000636351 AKIP1Q9NQ31 210 aa13.94□□□□□ -0.18
CLN3-247ENST00000636351 FOXA2Q9Y261 457 aaPredicted RBP13.94□□□□□ -0.18
CLN3-247ENST00000636351 TSSC4Q9Y5U2 329 aaPredicted RBP13.94□□□□□ -0.18
CLN3-247ENST00000636351 H0Y980 276 aa13.93□□□□□ -0.18
CLN3-247ENST00000636351 CD83Q01151 205 aa13.93□□□□□ -0.18
CLN3-247ENST00000636351 TCTEX1D4Q5JR98 221 aa13.93□□□□□ -0.18
CLN3-247ENST00000636351 LFNGQ8NES3 379 aa13.93□□□□□ -0.18
CLN3-247ENST00000636351 DEDD2Q8WXF8 326 aa13.93□□□□□ -0.18
CLN3-247ENST00000636351 SDHCQ99643 169 aaPredicted RBP13.93□□□□□ -0.18
CLN3-247ENST00000636351 TMEM140Q9NV12 185 aa13.93□□□□□ -0.18
CLN3-247ENST00000636351 KMT2CQ8NEZ4 4911 aaKnown RBP13.93□□□□□ -0.18
CLN3-247ENST00000636351 TNCP24821 2201 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 TEX13DA0A0J9YY54 714 aaPredicted RBP13.92□□□□□ -0.18
CLN3-247ENST00000636351 MARCH11A6NNE9 402 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 NUDT19A8MXV4 375 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 IGHG4P01861 327 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 PF4V1P10720 104 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 EGR2P11161 476 aaPredicted RBP13.92□□□□□ -0.18
CLN3-247ENST00000636351 IL7P13232 177 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 G6PCP35575 357 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 CRIP2P52943 208 aaPredicted RBP13.92□□□□□ -0.18
CLN3-247ENST00000636351 SSBP2P81877 361 aaPredicted RBP13.92□□□□□ -0.18
CLN3-247ENST00000636351 CFHR3Q02985 330 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 FOXE3Q13461 319 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 TRIM16LQ309B1 348 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 ZNF585BQ52M93 769 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 TMEM65Q6PI78 240 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 LCNL1Q6ZST4 164 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 WFDC9Q8NEX5 89 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 OR4A5Q8NH83 315 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 TMEM167AQ8TBQ9 72 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 SRSF12Q8WXF0 261 aaKnown RBP13.92□□□□□ -0.18
CLN3-247ENST00000636351 S100ZQ8WXG8 99 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 FAM212BQ9NTI7 297 aaPredicted RBP13.92□□□□□ -0.18
CLN3-247ENST00000636351 BET1LQ9NYM9 111 aa13.92□□□□□ -0.18
CLN3-247ENST00000636351 C3orf85A0A1B0GTC6 90 aa13.91□□□□□ -0.18
CLN3-247ENST00000636351 KRASP01116 189 aa13.91□□□□□ -0.18
CLN3-247ENST00000636351 RPLP1P05386 114 aaKnown RBP13.91□□□□□ -0.18
CLN3-247ENST00000636351 ELANEP08246 267 aa13.91□□□□□ -0.18
CLN3-247ENST00000636351 APELAP0DMC3 54 aa13.91□□□□□ -0.18
CLN3-247ENST00000636351 RPL8P62917 257 aaKnown RBP13.91□□□□□ -0.18
CLN3-247ENST00000636351 POU2AF1Q16633 256 aa13.91□□□□□ -0.18
CLN3-247ENST00000636351 MRGPRG-AS1Q2M3A8 158 aa13.91□□□□□ -0.18
CLN3-247ENST00000636351 C10orf55Q5SWW7 151 aa13.91□□□□□ -0.18
CLN3-247ENST00000636351 LINC00299Q6ZSB3 139 aa13.91□□□□□ -0.18
CLN3-247ENST00000636351 TP53RKQ96S44 253 aa13.91□□□□□ -0.18
CLN3-247ENST00000636351 C5orf66Q9H5L9 145 aa13.91□□□□□ -0.18
CLN3-247ENST00000636351 VSIG4Q9Y279 399 aa13.91□□□□□ -0.18
CLN3-247ENST00000636351 NUBP2Q9Y5Y2 271 aa13.91□□□□□ -0.18
CLN3-247ENST00000636351 CENPXA8MT69 81 aa13.9□□□□□ -0.18
CLN3-247ENST00000636351 HLA-GP17693 338 aa13.9□□□□□ -0.18
CLN3-247ENST00000636351 CD40LGP29965 261 aa13.9□□□□□ -0.18
CLN3-247ENST00000636351 PPIFP30405 207 aaKnown RBP13.9□□□□□ -0.18
CLN3-247ENST00000636351 MAS1LP35410 378 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 185.1 ms