RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CLDN18P56856 261 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 MZT1Q08AG7 82 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 ATP1A1-AS1Q5TC04 95 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 MMD2Q8IY49 270 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 RNF138Q8WVD3 245 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 ZCCHC14Q8WYQ9 949 aaKnown RBP10.57□□□□□ -0.72
LIG1-221ENST00000613670 COMMD5Q9GZQ3 224 aa10.57□□□□□ -0.72
LIG1-221ENST00000613670 M0R1B8 84 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 RRHO14718 337 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 SP1P08047 785 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 CD82P27701 267 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 PRDX2P32119 198 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 TFPI2P48307 235 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 NUTF2P61970 127 aaKnown RBP10.56□□□□□ -0.72
LIG1-221ENST00000613670 Q6ZS49 121 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 GBGT1Q8N5D6 347 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 CORO2AQ92828 525 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 SLC45A2Q9UMX9 530 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 SPTBN1Q01082 2364 aaKnown RBP10.56□□□□□ -0.72
LIG1-221ENST00000613670 K7ESF4 209 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 ODF3L1Q8IXM7 274 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 C11orf42Q8N5U0 333 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 H1FXQ92522 213 aaKnown RBP10.56□□□□□ -0.72
LIG1-221ENST00000613670 DAZAP1Q96EP5 407 aaKnown RBP10.56□□□□□ -0.72
LIG1-221ENST00000613670 SLC35E1Q96K37 410 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 C2orf88Q9BSF0 95 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 TPPP3Q9BW30 176 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 CBY1Q9Y3M2 126 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 IGHV3-48P01763 117 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 MPV17P39210 176 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 UBE2G1P62253 170 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 TMEM140Q9NV12 185 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 ARL2-SNX15V9GYD0 113 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 SPEGQ15772 3267 aa10.56□□□□□ -0.72
LIG1-221ENST00000613670 M0QZK8 103 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 GGCTO75223 188 aaKnown RBP10.55□□□□□ -0.72
LIG1-221ENST00000613670 CGAP01215 116 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 GATA2P23769 480 aaPredicted RBP10.55□□□□□ -0.72
LIG1-221ENST00000613670 BRS3P32247 399 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 TNFSF10P50591 281 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 PAFAH1B2P68402 229 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 MRPS11P82912 194 aaKnown RBP10.55□□□□□ -0.72
LIG1-221ENST00000613670 TRAT1Q6PIZ9 186 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 SLC24A4Q8NFF2 622 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 OR4S2Q8NH73 311 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 RND1Q92730 232 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 SSBP3Q9BWW4 388 aaPredicted RBP10.55□□□□□ -0.72
LIG1-221ENST00000613670 TCF19Q9Y242 345 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 HSBP1L1C9JCN9 74 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 RAB4AP20338 218 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 GCHFRP30047 84 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 PTTG1IPP53801 180 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 GFRA1P56159 465 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 SOX8P57073 446 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 UBE2L3P68036 154 aaKnown RBP10.55□□□□□ -0.72
LIG1-221ENST00000613670 VAMP3Q15836 100 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 COLCA1Q6ZS62 124 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 MOGAT3Q86VF5 341 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 SGK494Q96LW2 274 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 SNHG12Q9BXW3 62 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 WNT10AQ9GZT5 417 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 SH3BGRL2Q9UJC5 107 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 DKK1O94907 266 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 USF1P22415 310 aaPredicted RBP10.55□□□□□ -0.72
LIG1-221ENST00000613670 ZNRF1Q8ND25 227 aa10.55□□□□□ -0.72
LIG1-221ENST00000613670 SMPD2O60906 423 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 OR9G9P0C7N8 305 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 SRIP30626 198 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 SRSF7Q16629 238 aaKnown RBP eCLIP10.54□□□□□ -0.72
LIG1-221ENST00000613670 Q56UQ5 140 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 ACTL10Q5JWF8 245 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 Q6P435 159 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 FAM19A2Q8N3H0 131 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 STPG3Q8N7X2 389 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 MRPL37Q9BZE1 423 aaKnown RBP10.54□□□□□ -0.72
LIG1-221ENST00000613670 TMEM106BQ9NUM4 274 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 SIAH2O43255 324 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 COX7A2P2O60397 106 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 ADH4P08319 380 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 MFAP2P55001 183 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 DMRTA1Q5VZB9 504 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 KLHDC1Q8N7A1 406 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 BLNKQ8WV28 456 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 RAB9BQ9NP90 201 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 MED12LQ86YW9 2145 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 LY6G6EA0A0G2JKS1 128 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 HINT1P49773 126 aaPredicted RBP10.54□□□□□ -0.72
LIG1-221ENST00000613670 NRN1LQ496H8 165 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 SPATA45Q537H7 98 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 FAM122AQ96E09 287 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 C11orf1Q9H5F2 150 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 U3KQA8 63 aa10.54□□□□□ -0.72
LIG1-221ENST00000613670 C20orf202A1L168 122 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 PLAUP00749 431 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 IL6RP08887 468 aaPredicted RBP10.53□□□□□ -0.72
LIG1-221ENST00000613670 SELLP14151 372 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 CENPWQ5EE01 88 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 PRR31Q5SQ13 230 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 TMEM105Q8N8V8 129 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 ZNF114Q8NC26 417 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms