RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 OR9G9P0C7N8 305 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 ZNF182P17025 639 aaPredicted RBP11.64□□□□□ -0.55
TRIM28-205ENST00000595028 HRH1P35367 487 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 DEFA5Q01523 94 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 AADACL3Q5VUY0 350 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 DHRS11Q6UWP2 260 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 TMEM167AQ8TBQ9 72 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 DLX4Q92988 240 aaPredicted RBP11.64□□□□□ -0.55
TRIM28-205ENST00000595028 SPIN2AQ99865 258 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 SPIN2BQ9BPZ2 258 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 ZNF2Q9BSG1 426 aaPredicted RBP11.64□□□□□ -0.55
TRIM28-205ENST00000595028 SCOCQ9UIL1 159 aa11.64□□□□□ -0.55
TRIM28-205ENST00000595028 HLA-DMAP28067 261 aa11.63□□□□□ -0.55
TRIM28-205ENST00000595028 GNRHRP30968 328 aa11.63□□□□□ -0.55
TRIM28-205ENST00000595028 RCVRNP35243 200 aa11.63□□□□□ -0.55
TRIM28-205ENST00000595028 INSL3P51460 131 aa11.63□□□□□ -0.55
TRIM28-205ENST00000595028 SSX9Q7RTT3 188 aa11.63□□□□□ -0.55
TRIM28-205ENST00000595028 OR51H1Q8NH63 302 aa11.63□□□□□ -0.55
TRIM28-205ENST00000595028 BET1LQ9NYM9 111 aa11.63□□□□□ -0.55
TRIM28-205ENST00000595028 SACSQ9NZJ4 4579 aa11.63□□□□□ -0.55
TRIM28-205ENST00000595028 FAM25AB3EWG3 89 aa11.62□□□□□ -0.55
TRIM28-205ENST00000595028 FAM25CB3EWG5 89 aa11.62□□□□□ -0.55
TRIM28-205ENST00000595028 FAM25GB3EWG6 89 aa11.62□□□□□ -0.55
TRIM28-205ENST00000595028 TEX22C9J3V5 150 aa11.62□□□□□ -0.55
TRIM28-205ENST00000595028 MAS1LP35410 378 aa11.62□□□□□ -0.55
TRIM28-205ENST00000595028 RPL27AP46776 148 aaKnown RBP11.62□□□□□ -0.55
TRIM28-205ENST00000595028 TAS2R31P59538 309 aa11.62□□□□□ -0.55
TRIM28-205ENST00000595028 OR4A47Q6IF82 309 aa11.62□□□□□ -0.55
TRIM28-205ENST00000595028 ZNF429Q86V71 674 aa11.62□□□□□ -0.55
TRIM28-205ENST00000595028 LYSMD2Q8IV50 215 aa11.62□□□□□ -0.55
TRIM28-205ENST00000595028 USMG5Q96IX5 58 aa11.62□□□□□ -0.55
TRIM28-205ENST00000595028 RANGRFQ9HD47 186 aaPredicted RBP11.62□□□□□ -0.55
TRIM28-205ENST00000595028 SAP30O75446 220 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 RBMXL2O75526 392 aaKnown RBP11.61□□□□□ -0.55
TRIM28-205ENST00000595028 S1PR2O95136 353 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 HPRT1P00492 218 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 RLN1P04808 185 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 NQO2P16083 231 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 ZP3P21754 424 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 ECI1P42126 302 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 RPL8P62917 257 aaKnown RBP11.61□□□□□ -0.55
TRIM28-205ENST00000595028 ZNF45Q02386 682 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 DCTN2Q13561 401 aaKnown RBP11.61□□□□□ -0.55
TRIM28-205ENST00000595028 SPCS2Q15005 226 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 POU2AF1Q16633 256 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 CLVS1Q8IUQ0 354 aaPredicted RBP11.61□□□□□ -0.55
TRIM28-205ENST00000595028 TTC9CQ8N5M4 171 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 OR6F1Q8NGZ6 308 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 OR4A5Q8NH83 315 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 CD300LFQ8TDQ1 290 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 WWC2-AS2Q96NR7 200 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 AIFM2Q9BRQ8 373 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 COMMD9Q9P000 198 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 EXTL2Q9UBQ6 330 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 ZNF257Q9Y2Q1 563 aa11.61□□□□□ -0.55
TRIM28-205ENST00000595028 A0A1B0GW64 132 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 ANKRD34BA5PLL1 514 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 HMX3A6NHT5 357 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 FAM223BA6NKX1 122 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 PRH1P02810 166 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 IL6RP08887 468 aaPredicted RBP11.6□□□□□ -0.55
TRIM28-205ENST00000595028 ZNF735P0CB33 412 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 HLA-GP17693 338 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 RHOGP84095 191 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 RNASE12Q5GAN4 147 aaKnown RBP11.6□□□□□ -0.55
TRIM28-205ENST00000595028 DEFB121Q5J5C9 76 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 ZNF343Q6P1L6 599 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 ACSM6Q6P461 480 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 FAM223AQ8IWN6 122 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 CMTM1Q8IZ96 169 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 RAB2BQ8WUD1 216 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 FYTTD1Q96QD9 318 aaKnown RBP11.6□□□□□ -0.55
TRIM28-205ENST00000595028 PRR25Q96S07 402 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 KRTAP17-1Q9BYP8 105 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 PLEKHA2Q9HB19 425 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 HRASLSQ9HDD0 168 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 AKIP1Q9NQ31 210 aa11.6□□□□□ -0.55
TRIM28-205ENST00000595028 ZNF256Q9Y2P7 627 aaPredicted RBP11.6□□□□□ -0.55
TRIM28-205ENST00000595028 TRBV9A0A0B4J1U6 114 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 NPIPB5A8MRT5 1133 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 E7EUB6 86 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 GPR31O00270 319 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 PGLYRP1O75594 196 aaPredicted RBP11.59□□□□□ -0.55
TRIM28-205ENST00000595028 TPPPO94811 219 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 TRBV12-3P01733 135 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 MYOD1P15172 320 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 F2RP25116 425 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 TSPAN5P62079 268 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 EXOSC2Q13868 293 aaKnown RBP11.59□□□□□ -0.55
TRIM28-205ENST00000595028 SLC25A42Q86VD7 318 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 BCL7BQ9BQE9 202 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 MIXL1Q9H2W2 232 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 SLC2A9Q9NRM0 540 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 TMEM140Q9NV12 185 aa11.59□□□□□ -0.55
TRIM28-205ENST00000595028 DPPA5A6NC42 116 aa11.58□□□□□ -0.56
TRIM28-205ENST00000595028 UPK2O00526 184 aa11.58□□□□□ -0.56
TRIM28-205ENST00000595028 TMBIM6P55061 237 aa11.58□□□□□ -0.56
TRIM28-205ENST00000595028 C19orf35Q6ZS72 473 aa11.58□□□□□ -0.56
TRIM28-205ENST00000595028 LAX1Q8IWV1 398 aa11.58□□□□□ -0.56
TRIM28-205ENST00000595028 DMBX1Q8NFW5 382 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms