RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 JPT1Q9UK76 154 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 ARFGEF3Q5TH69 2177 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 MRPL54Q6P161 138 aaKnown RBP12.6□□□□□ -0.39
CUX1-214ENST00000550008 C20orf204Q6ZNR8 217 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 OR10G8Q8NGN5 311 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 IL22RA2Q969J5 263 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 TMEM18Q96B42 140 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 ASCL3Q9NQ33 180 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 CRIM1Q9NZV1 1036 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 IL19Q9UHD0 177 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 PAX5Q02548 391 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 C1orf174Q8IYL3 243 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 IGKV3-7A0A075B6H7 116 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 WIPF3A6NGB9 483 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 HSBP1L1C9JCN9 74 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 TRGC2P03986 189 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 RPL8P62917 257 aaKnown RBP12.6□□□□□ -0.39
CUX1-214ENST00000550008 TFF3Q07654 80 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 RPRMLQ8N4K4 120 aa12.6□□□□□ -0.39
CUX1-214ENST00000550008 HSPE1P61604 102 aaKnown RBP12.59□□□□□ -0.39
CUX1-214ENST00000550008 PMS2P11Q13670 270 aa12.59□□□□□ -0.39
CUX1-214ENST00000550008 C18orf12Q96KH6 178 aa12.59□□□□□ -0.39
CUX1-214ENST00000550008 TMEM42Q69YG0 159 aa12.59□□□□□ -0.39
CUX1-214ENST00000550008 C16orf82Q7Z2V1 217 aa12.59□□□□□ -0.39
CUX1-214ENST00000550008 MUC15Q8N387 334 aa12.59□□□□□ -0.39
CUX1-214ENST00000550008 DBX1A6NMT0 343 aa12.59□□□□□ -0.39
CUX1-214ENST00000550008 ATXN7O15265 892 aaPredicted RBP12.59□□□□□ -0.39
CUX1-214ENST00000550008 STARD4Q96DR4 205 aa12.59□□□□□ -0.39
CUX1-214ENST00000550008 SMIM8Q96KF7 97 aa12.59□□□□□ -0.39
CUX1-214ENST00000550008 MPZP25189 248 aa12.58□□□□□ -0.39
CUX1-214ENST00000550008 CEACAM3P40198 252 aa12.58□□□□□ -0.39
CUX1-214ENST00000550008 CCL20P78556 96 aa12.58□□□□□ -0.39
CUX1-214ENST00000550008 OR5I1Q13606 314 aa12.58□□□□□ -0.39
CUX1-214ENST00000550008 PEAR1Q5VY43 1037 aaPredicted RBP12.58□□□□□ -0.39
CUX1-214ENST00000550008 ZNF600Q6ZNG1 722 aa12.58□□□□□ -0.39
CUX1-214ENST00000550008 FAM57AQ8TBR7 257 aa12.58□□□□□ -0.39
CUX1-214ENST00000550008 RNF115Q9Y4L5 304 aa12.58□□□□□ -0.39
CUX1-214ENST00000550008 IGHV3-35A0A0C4DH35 117 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 ZNF785A8K8V0 405 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 LINC00869P0C866 280 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 ZNF497Q6ZNH5 498 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 C1orf162Q8NEQ5 155 aaPredicted RBP12.58□□□□□ -0.4
CUX1-214ENST00000550008 WDR61Q9GZS3 305 aaKnown RBP12.58□□□□□ -0.4
CUX1-214ENST00000550008 TMEM56-RWDD3S4R434 201 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 RPL29P47914 159 aaKnown RBP12.58□□□□□ -0.4
CUX1-214ENST00000550008 RND2P52198 227 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 ZNF383Q8NA42 475 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 SGMS2Q8NHU3 365 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 TGIF2-C20orf24A0A0A6YYL0 155 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 CEACAM18A8MTB9 384 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 GNG7O60262 68 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 CLN5O75503 358 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 GPR6P46095 362 aaPredicted RBP12.58□□□□□ -0.4
CUX1-214ENST00000550008 RPL27AP46776 148 aaKnown RBP12.58□□□□□ -0.4
CUX1-214ENST00000550008 TMPRSS3P57727 454 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 SSX7Q7RTT5 188 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 SIGLECL1Q8N7X8 197 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 FAM222BQ8WU58 562 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 SPSB4Q96A44 273 aa12.58□□□□□ -0.4
CUX1-214ENST00000550008 HELTA6NFD8 242 aa12.57□□□□□ -0.4
CUX1-214ENST00000550008 IFNL4K9M1U5 179 aa12.57□□□□□ -0.4
CUX1-214ENST00000550008 GATA2P23769 480 aaPredicted RBP12.57□□□□□ -0.4
CUX1-214ENST00000550008 ZNF324BQ6AW86 544 aaPredicted RBP12.57□□□□□ -0.4
CUX1-214ENST00000550008 FAM53AQ6NSI3 398 aaPredicted RBP12.57□□□□□ -0.4
CUX1-214ENST00000550008 COA4Q9NYJ1 87 aa12.57□□□□□ -0.4
CUX1-214ENST00000550008 IGHV1-69-2A0A0G2JMI3 117 aa12.57□□□□□ -0.4
CUX1-214ENST00000550008 PDPNQ86YL7 162 aa12.57□□□□□ -0.4
CUX1-214ENST00000550008 SRD5A3Q9H8P0 318 aa12.57□□□□□ -0.4
CUX1-214ENST00000550008 HSBP1O75506 76 aa12.57□□□□□ -0.4
CUX1-214ENST00000550008 CXorf1O96002 111 aa12.57□□□□□ -0.4
CUX1-214ENST00000550008 NAPSAO96009 420 aa12.57□□□□□ -0.4
CUX1-214ENST00000550008 ARL14EPLP0DKL9 152 aa12.57□□□□□ -0.4
CUX1-214ENST00000550008 LIME1Q9H400 295 aa12.57□□□□□ -0.4
CUX1-214ENST00000550008 KBTBD11O94819 623 aa12.56□□□□□ -0.4
CUX1-214ENST00000550008 C10orf113Q5VZT2 155 aa12.56□□□□□ -0.4
CUX1-214ENST00000550008 NHLRC2Q8NBF2 726 aa12.56□□□□□ -0.4
CUX1-214ENST00000550008 CYTL1Q9NRR1 136 aa12.56□□□□□ -0.4
CUX1-214ENST00000550008 TMEM167BQ9NRX6 74 aa12.56□□□□□ -0.4
CUX1-214ENST00000550008 RAXQ9Y2V3 346 aa12.56□□□□□ -0.4
CUX1-214ENST00000550008 AMMECR1Q9Y4X0 333 aaPredicted RBP12.56□□□□□ -0.4
CUX1-214ENST00000550008 FAM90A26D6RGX4 464 aa12.56□□□□□ -0.4
CUX1-214ENST00000550008 FOXL2NBQ6ZUU3 175 aa12.56□□□□□ -0.4
CUX1-214ENST00000550008 TMEM106BQ9NUM4 274 aa12.56□□□□□ -0.4
CUX1-214ENST00000550008 A0A0C4DFX4 3053 aa12.56□□□□□ -0.4
CUX1-214ENST00000550008 CSRP1P21291 193 aaKnown RBP12.56□□□□□ -0.4
CUX1-214ENST00000550008 ECSCRQ19T08 205 aa12.56□□□□□ -0.4
CUX1-214ENST00000550008 OR4F17Q8NGA8 305 aa12.56□□□□□ -0.4
CUX1-214ENST00000550008 PTPN13Q12923 2485 aa12.56□□□□□ -0.4
CUX1-214ENST00000550008 RRHO14718 337 aa12.55□□□□□ -0.4
CUX1-214ENST00000550008 CA2P00918 260 aa12.55□□□□□ -0.4
CUX1-214ENST00000550008 ZNF25P17030 456 aaPredicted RBP12.55□□□□□ -0.4
CUX1-214ENST00000550008 ID3Q02535 119 aa12.55□□□□□ -0.4
CUX1-214ENST00000550008 ASCL5Q7RTU5 278 aa12.55□□□□□ -0.4
CUX1-214ENST00000550008 METTL1Q9UBP6 276 aaKnown RBP12.55□□□□□ -0.4
CUX1-214ENST00000550008 S4R3C0 116 aa12.55□□□□□ -0.4
CUX1-214ENST00000550008 PPIAL4CA0A0B4J2A2 164 aa12.55□□□□□ -0.4
CUX1-214ENST00000550008 PPIAL4GP0DN37 164 aa12.55□□□□□ -0.4
CUX1-214ENST00000550008 IER3P46695 156 aa12.55□□□□□ -0.4
CUX1-214ENST00000550008 HERPUD1Q15011 391 aa12.55□□□□□ -0.4
CUX1-214ENST00000550008 SPACA3Q8IXA5 215 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms