RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 FSCN3Q9NQT6 498 aa16.69■□□□□ 0.26
HDAC4-215ENST00000543185 IFITM3Q01628 133 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 SRSF12Q8WXF0 261 aaKnown RBP16.68■□□□□ 0.26
HDAC4-215ENST00000543185 GCSAMLQ5JQS6 135 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 MIC13Q5XKP0 118 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 CLDND2Q8NHS1 167 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 CCL27Q9Y4X3 112 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 ZNF56Q15929 161 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 BIVMQ86UB2 503 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 SELENOHQ8IZQ5 122 aaKnown RBP16.68■□□□□ 0.26
HDAC4-215ENST00000543185 SPANXDQ9BXN6 97 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 ST20Q9HBF5 79 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 LOXL3P58215 753 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 CRISPLD2Q9H0B8 497 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 G6PC2Q9NQR9 355 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 GPX1P07203 203 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 TINAGQ9UJW2 476 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 A0A0G2JMZ2 1700 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 LRRC37A2A6NM11 1700 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 LRRC37AA6NMS7 1700 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 DNM1P46Q6ZS02 220 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 FGFRL1Q8N441 504 aa16.68■□□□□ 0.26
HDAC4-215ENST00000543185 CT62P0C5K7 136 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 LINC00470Q9BZP3 86 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 YAE1D1Q9NRH1 226 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 PGPEP1Q9NXJ5 209 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 POC1AQ8NBT0 407 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 LAMTOR2Q9Y2Q5 125 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 ATOH7Q8N100 152 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 YBX2Q9Y2T7 364 aaKnown RBP16.67■□□□□ 0.26
HDAC4-215ENST00000543185 A0A1W2PR80 420 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 UBE2CO00762 179 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 MNX1P50219 401 aaPredicted RBP16.67■□□□□ 0.26
HDAC4-215ENST00000543185 TBR1Q16650 682 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 RRHO14718 337 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 DXOO77932 396 aaKnown RBP16.67■□□□□ 0.26
HDAC4-215ENST00000543185 ZNF324BQ6AW86 544 aaPredicted RBP16.67■□□□□ 0.26
HDAC4-215ENST00000543185 LIMS2Q7Z4I7 341 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 NPCDR1Q9BY65 106 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 TRAV8-2A0A0B4J237 113 aa16.67■□□□□ 0.26
HDAC4-215ENST00000543185 J3QW42 95 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 ZNF488Q96MN9 340 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.66■□□□□ 0.26
HDAC4-215ENST00000543185 OTX1P32242 354 aaPredicted RBP16.66■□□□□ 0.26
HDAC4-215ENST00000543185 J3KRW8 73 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 PLNP26678 52 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 OR52M1Q8NGK5 317 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 MGAMO43451 1857 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 OBSL1O75147 1896 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 HSPE1P61604 102 aaKnown RBP16.66■□□□□ 0.26
HDAC4-215ENST00000543185 OR4D11Q8NGI4 311 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 TMEM170BQ5T4T1 132 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 SLC25A2Q9BXI2 301 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 ZNF257Q9Y2Q1 563 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 PRSS41Q7RTY9 318 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.66■□□□□ 0.26
HDAC4-215ENST00000543185 NPFFO15130 113 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 TIMM23BQ5SRD1 257 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 SPINK14Q6IE38 97 aa16.66■□□□□ 0.26
HDAC4-215ENST00000543185 PGLYRP1O75594 196 aaPredicted RBP16.65■□□□□ 0.26
HDAC4-215ENST00000543185 TRAV8-6A0A0B4J262 113 aa16.65■□□□□ 0.26
HDAC4-215ENST00000543185 LOC390937A0A1W2PQ73 354 aa16.65■□□□□ 0.26
HDAC4-215ENST00000543185 TCF20Q9UGU0 1960 aaKnown RBP16.65■□□□□ 0.26
HDAC4-215ENST00000543185 TRBV5-7A0A0A0MS05 114 aa16.65■□□□□ 0.26
HDAC4-215ENST00000543185 FAM106AQ4KMX7 169 aa16.65■□□□□ 0.26
HDAC4-215ENST00000543185 GPR183P32249 361 aa16.65■□□□□ 0.26
HDAC4-215ENST00000543185 MPV17P39210 176 aa16.65■□□□□ 0.26
HDAC4-215ENST00000543185 GZMMP51124 257 aa16.65■□□□□ 0.26
HDAC4-215ENST00000543185 LHX9Q9NQ69 397 aa16.65■□□□□ 0.26
HDAC4-215ENST00000543185 RCC1LQ96I51 464 aaKnown RBP16.65■□□□□ 0.26
HDAC4-215ENST00000543185 PGPA6NDG6 321 aa16.65■□□□□ 0.26
HDAC4-215ENST00000543185 FAM181BA6NEQ2 426 aa16.65■□□□□ 0.26
HDAC4-215ENST00000543185 ERGP11308 486 aa16.65■□□□□ 0.26
HDAC4-215ENST00000543185 FAM159AQ6UWV7 190 aa16.65■□□□□ 0.26
HDAC4-215ENST00000543185 TNCP24821 2201 aa16.64■□□□□ 0.26
HDAC4-215ENST00000543185 KLK10O43240 276 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 MGAT2Q10469 447 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 PLA2G3Q9NZ20 509 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 EML5Q05BV3 1969 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 FCGR2BP31994 310 aaPredicted RBP16.64■□□□□ 0.25
HDAC4-215ENST00000543185 TIMP4Q99727 224 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 PRDM14Q9GZV8 571 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 IGHMP01871 453 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 OR10J3Q5JRS4 329 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 CNTFRP26992 372 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 FBLN7Q53RD9 439 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 DNASE2BQ8WZ79 361 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 Q96M66 194 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 SF3B6Q9Y3B4 125 aaKnown RBP16.64■□□□□ 0.25
HDAC4-215ENST00000543185 LOC105371267A0A1B0GV96 52 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 VKORC1L1Q8N0U8 176 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 AMER3Q8N944 861 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 TMEM242Q9NWH2 141 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 LINC00614P0C842 121 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 FXYD3Q14802 87 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 OVOL2Q9BRP0 275 aa16.64■□□□□ 0.25
HDAC4-215ENST00000543185 PAX1P15863 534 aa16.63■□□□□ 0.25
HDAC4-215ENST00000543185 NUTF2P61970 127 aaKnown RBP16.63■□□□□ 0.25
HDAC4-215ENST00000543185 MYEOVQ96EZ4 313 aa16.63■□□□□ 0.25
HDAC4-215ENST00000543185 MED13Q9UHV7 2174 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms