RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 ARL6IP6Q8N6S5 226 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 ALKBH7Q9BT30 221 aaPredicted RBP8.1□□□□□ -1.11
VCAN-210ENST00000513960 ARL2-SNX15V9GYD0 113 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FRYLO94915 3013 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 IL6RP08887 468 aaPredicted RBP8.09□□□□□ -1.11
VCAN-210ENST00000513960 EDDM3AQ14507 147 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 RNASEKQ6P5S7 137 aaKnown RBP8.09□□□□□ -1.11
VCAN-210ENST00000513960 DOLPP1Q86YN1 238 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 MMD2Q8IY49 270 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 KLHDC1Q8N7A1 406 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 NHLRC2Q8NBF2 726 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 ZNF738Q8NE65 137 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 OR52L2PQ8NGH6 319 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 C12orf49Q9H741 205 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 NCOR1O75376 2440 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 KLRC4-KLRK1H3BQV0 150 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 RPL15P61313 204 aaKnown RBP8.09□□□□□ -1.11
VCAN-210ENST00000513960 RNPS1Q15287 305 aaKnown RBP8.09□□□□□ -1.11
VCAN-210ENST00000513960 C3AR1Q16581 482 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 STUMQ69YW2 141 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 PRR27Q6MZM9 219 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 SAXO1Q8IYX7 474 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 TCTEX1D1Q8N7M0 179 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 LSM10Q969L4 123 aaKnown RBP8.09□□□□□ -1.11
VCAN-210ENST00000513960 C20orf144Q9BQM9 153 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 LRFN3Q9BTN0 628 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 GNB4Q9HAV0 340 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 KLF13Q9Y2Y9 288 aaPredicted RBP8.09□□□□□ -1.11
VCAN-210ENST00000513960 USF3Q68DE3 2245 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 RPL31P62899 125 aaKnown RBP8.09□□□□□ -1.11
VCAN-210ENST00000513960 GAGE1Q13065 139 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 ASPHD1Q5U4P2 390 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 PCSK4Q6UW60 755 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 OR4P4Q8NGL7 312 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 OR4A16Q8NH70 328 aa8.09□□□□□ -1.11
VCAN-210ENST00000513960 TNRC18O15417 2968 aaPredicted RBP8.09□□□□□ -1.12
VCAN-210ENST00000513960 OR7C2O60412 319 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 CD1BP29016 333 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 CEACAM8P31997 349 aaPredicted RBP8.08□□□□□ -1.12
VCAN-210ENST00000513960 MEOX1P50221 254 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 MAJINQ3KP22 176 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 MRGPRDQ8TDS7 321 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 FER1L6-AS2Q96M78 137 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 RNF2Q99496 336 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 SPRY4Q9C004 299 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 WDFY3Q8IZQ1 3526 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 TRAV24A0A0B4J272 114 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 MT-CO3P00414 261 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 TFF1P04155 84 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 ZNF585BQ52M93 769 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 ZNF331Q9NQX6 463 aaPredicted RBP8.08□□□□□ -1.12
VCAN-210ENST00000513960 RPH3ALQ9UNE2 315 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 PSG11Q9UQ72 335 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 DPRXA6NFQ7 191 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 CDIPTO14735 213 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 CCL25O15444 150 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 TYMSP04818 313 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 CAMPP49913 170 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 GNG4P50150 75 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 UBE2NP61088 152 aaKnown RBP8.08□□□□□ -1.12
VCAN-210ENST00000513960 RELBQ01201 579 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 VKORC1L1Q8N0U8 176 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 NANOS1Q8WY41 292 aaKnown RBP8.08□□□□□ -1.12
VCAN-210ENST00000513960 TECTAO75443 2155 aa8.08□□□□□ -1.12
VCAN-210ENST00000513960 C17orf98A8MV24 154 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 FCGR3BO75015 233 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 SP1P08047 785 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 CD46P15529 392 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 GNG3P63215 75 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 TIGITQ495A1 244 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 Q8NFD4 153 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 POM121L2Q96KW2 1035 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 RNASE7Q9H1E1 156 aaKnown RBP8.07□□□□□ -1.12
VCAN-210ENST00000513960 DEFB127Q9H1M4 99 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 M0QZ24 198 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 MT-CO2P00403 227 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 TIMP3P35625 211 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 VHLLQ6RSH7 139 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 SLC24A4Q8NFF2 622 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 SSBP3Q9BWW4 388 aaPredicted RBP8.07□□□□□ -1.12
VCAN-210ENST00000513960 ENY2Q9NPA8 101 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 KCNIP2Q9NS61 270 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 TIMM9Q9Y5J7 89 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 ZNF503-AS2A6NEH8 195 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 LRRC30A6NM36 301 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 TNFSF15O95150 251 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 SAPCD1Q5SSQ6 148 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 DHRS13Q6UX07 377 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 TEX43Q6ZNM6 134 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 PQLC2Q6ZP29 291 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 GALMQ96C23 342 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 HIPK2Q9H2X6 1198 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 IL36BQ9NZH7 164 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 WASHC3Q9Y3C0 194 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 MPC1Q9Y5U8 109 aa8.07□□□□□ -1.12
VCAN-210ENST00000513960 M0R2Z0 102 aa8.06□□□□□ -1.12
VCAN-210ENST00000513960 OR2H2O95918 312 aa8.06□□□□□ -1.12
VCAN-210ENST00000513960 COL8A2P25067 703 aa8.06□□□□□ -1.12
VCAN-210ENST00000513960 HES3Q5TGS1 186 aa8.06□□□□□ -1.12
VCAN-210ENST00000513960 TMEM14EPQ6UXP3 125 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms