RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ICE1Q9Y2F5 2266 aa14.83□□□□□ -0.04
VIM-206ENST00000487938 CACNA1GO43497 2377 aa14.82□□□□□ -0.04
VIM-206ENST00000487938 PGPEP1LA6NFU8 196 aa14.82□□□□□ -0.04
VIM-206ENST00000487938 GFRA3O60609 400 aa14.82□□□□□ -0.04
VIM-206ENST00000487938 FAM3BP58499 235 aaPredicted RBP14.82□□□□□ -0.04
VIM-206ENST00000487938 GAMTQ14353 236 aa14.82□□□□□ -0.04
VIM-206ENST00000487938 DUX4L9Q6RFH8 374 aaPredicted RBP14.82□□□□□ -0.04
VIM-206ENST00000487938 ITLN1Q8WWA0 313 aa14.82□□□□□ -0.04
VIM-206ENST00000487938 TMEM37Q8WXS4 190 aa14.82□□□□□ -0.04
VIM-206ENST00000487938 CALYQ9NYX4 217 aa14.82□□□□□ -0.04
VIM-206ENST00000487938 ZNF729A6NN14 1252 aaPredicted RBP14.82□□□□□ -0.04
VIM-206ENST00000487938 F2RL2O00254 374 aa14.82□□□□□ -0.04
VIM-206ENST00000487938 HIST1H1BP16401 226 aaKnown RBP14.82□□□□□ -0.04
VIM-206ENST00000487938 CR1LQ2VPA4 569 aa14.82□□□□□ -0.04
VIM-206ENST00000487938 AARDQ4LEZ3 155 aa14.82□□□□□ -0.04
VIM-206ENST00000487938 PDLIM3Q53GG5 364 aaPredicted RBP14.82□□□□□ -0.04
VIM-206ENST00000487938 OR2T10Q8NGZ9 312 aa14.82□□□□□ -0.04
VIM-206ENST00000487938 LY86O95711 162 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 PRSS8Q16651 343 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 ZNF474Q6S9Z5 364 aaPredicted RBP14.81□□□□□ -0.04
VIM-206ENST00000487938 TMEM183AQ8IXX5 376 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 SSMEM1Q8WWF3 244 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 PXMP4Q9Y6I8 212 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 OTOGLQ3ZCN5 2332 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 XKRY2A2RUG3 117 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 PRSS46E5RG02 174 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 SOX15O60248 233 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 ARL14EPLP0DKL9 152 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 C17orf58Q2M2W7 97 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 CT45A1Q5HYN5 189 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 TGIF2LYQ8IUE0 185 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 CT45A3Q8NHU0 189 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 FUT9Q9Y231 359 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 TCF19Q9Y242 345 aa14.81□□□□□ -0.04
VIM-206ENST00000487938 FAM90A9PA6NNJ1 464 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 VENTXO95231 258 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 MYOD1P15172 320 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 OPRK1P41145 380 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 KLF3P57682 345 aaPredicted RBP14.8□□□□□ -0.04
VIM-206ENST00000487938 LINC01551Q86U37 167 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 C1orf174Q8IYL3 243 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 ZNF114Q8NC26 417 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 DEFB108BQ8NET1 73 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 OR1P1Q8NH06 330 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 OR52E5Q8NH55 327 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 GGTLC1Q9BX51 225 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 EP300Q09472 2414 aaPredicted RBP14.8□□□□□ -0.04
VIM-206ENST00000487938 PDE6DO43924 150 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 LHBP01229 141 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 CFHR2P36980 270 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 FAM78BQ5VT40 261 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 C1orf159Q96HA4 380 aa14.8□□□□□ -0.04
VIM-206ENST00000487938 DSCAMO60469 2012 aa14.79□□□□□ -0.04
VIM-206ENST00000487938 MBD3L4A6NDZ8 208 aaPredicted RBP14.79□□□□□ -0.04
VIM-206ENST00000487938 MBD3L3A6NE82 208 aaPredicted RBP14.79□□□□□ -0.04
VIM-206ENST00000487938 MBD3L5A6NJ08 208 aaPredicted RBP14.79□□□□□ -0.04
VIM-206ENST00000487938 RBFOX2O43251 390 aaKnown RBP eCLIP14.79□□□□□ -0.04
VIM-206ENST00000487938 C1QTNF9P0C862 333 aa14.79□□□□□ -0.04
VIM-206ENST00000487938 MBD3L2Q8NHZ7 208 aaPredicted RBP14.79□□□□□ -0.04
VIM-206ENST00000487938 DDB2Q92466 427 aa14.79□□□□□ -0.04
VIM-206ENST00000487938 RAB1CQ92928 201 aa14.79□□□□□ -0.04
VIM-206ENST00000487938 PRO1933Q9H354 126 aa14.79□□□□□ -0.04
VIM-206ENST00000487938 DMXL1Q9Y485 3027 aa14.79□□□□□ -0.04
VIM-206ENST00000487938 MPDU1O75352 247 aa14.78□□□□□ -0.04
VIM-206ENST00000487938 AMBPP02760 352 aa14.78□□□□□ -0.04
VIM-206ENST00000487938 CGB3P0DN86 165 aa14.78□□□□□ -0.04
VIM-206ENST00000487938 CGB7P0DN87 165 aa14.78□□□□□ -0.04
VIM-206ENST00000487938 HNF1AP20823 631 aa14.78□□□□□ -0.04
VIM-206ENST00000487938 FAM169BQ8N8A8 192 aa14.78□□□□□ -0.04
VIM-206ENST00000487938 RHOVQ96L33 236 aa14.78□□□□□ -0.04
VIM-206ENST00000487938 KCNIP2Q9NS61 270 aa14.78□□□□□ -0.04
VIM-206ENST00000487938 SAA2-SAA4A0A096LPE2 208 aa14.78□□□□□ -0.04
VIM-206ENST00000487938 GGCTO75223 188 aaKnown RBP14.78□□□□□ -0.04
VIM-206ENST00000487938 SAA2P0DJI9 122 aaPredicted RBP14.78□□□□□ -0.04
VIM-206ENST00000487938 SRP14P37108 136 aaKnown RBP14.78□□□□□ -0.04
VIM-206ENST00000487938 HINT2Q9BX68 163 aa14.78□□□□□ -0.04
VIM-206ENST00000487938 SMG1Q96Q15 3661 aaKnown RBP14.77□□□□□ -0.04
VIM-206ENST00000487938 NDUFS6O75380 124 aaKnown RBP14.77□□□□□ -0.04
VIM-206ENST00000487938 GLRXP35754 106 aa14.77□□□□□ -0.04
VIM-206ENST00000487938 GNG10P50151 68 aa14.77□□□□□ -0.04
VIM-206ENST00000487938 NUBP1P53384 320 aa14.77□□□□□ -0.04
VIM-206ENST00000487938 ARSJQ5FYB0 599 aaPredicted RBP14.77□□□□□ -0.04
VIM-206ENST00000487938 TIMM23BQ5SRD1 257 aa14.77□□□□□ -0.04
VIM-206ENST00000487938 OR4A47Q6IF82 309 aa14.77□□□□□ -0.04
VIM-206ENST00000487938 LYG1Q8N1E2 194 aa14.77□□□□□ -0.04
VIM-206ENST00000487938 ZADH2Q8N4Q0 377 aa14.77□□□□□ -0.04
VIM-206ENST00000487938 OR4S2Q8NH73 311 aa14.77□□□□□ -0.04
VIM-206ENST00000487938 NPVFQ9HCQ7 196 aa14.77□□□□□ -0.04
VIM-206ENST00000487938 STAG3L2P0CL84 134 aa14.77□□□□□ -0.05
VIM-206ENST00000487938 STAG3L3P0CL85 134 aa14.77□□□□□ -0.05
VIM-206ENST00000487938 TMPRSS3P57727 454 aa14.77□□□□□ -0.05
VIM-206ENST00000487938 SPATA31B1PQ5VZV4 182 aa14.77□□□□□ -0.05
VIM-206ENST00000487938 LURAP1LQ8IV03 231 aa14.77□□□□□ -0.05
VIM-206ENST00000487938 C15orf61A6NNL5 157 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 KIR2DS2P43631 304 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 ACTL10Q5JWF8 245 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 KCNIP4Q6PIL6 250 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 C22orf34Q6ZV56 151 aa14.76□□□□□ -0.05
VIM-206ENST00000487938 SEPSECSQ9HD40 501 aaKnown RBP14.76□□□□□ -0.05
VIM-206ENST00000487938 TRBV20OR9-2A0A075B6H5 130 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms