RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TGM7Q96PF1 710 aa4.04□□□□□ -1.76
USP40-213ENST00000483216 TIMM29Q9BSF4 260 aa4.04□□□□□ -1.76
USP40-213ENST00000483216 PSMG3Q9BT73 122 aaPredicted RBP4.04□□□□□ -1.76
USP40-213ENST00000483216 ADAT1Q9BUB4 502 aaKnown RBP4.04□□□□□ -1.76
USP40-213ENST00000483216 VAMP8Q9BV40 100 aa4.04□□□□□ -1.76
USP40-213ENST00000483216 PARD6GQ9BYG4 376 aaPredicted RBP4.04□□□□□ -1.76
USP40-213ENST00000483216 OR51I2Q9H344 312 aa4.04□□□□□ -1.76
USP40-213ENST00000483216 BANF2Q9H503 90 aa4.04□□□□□ -1.76
USP40-213ENST00000483216 ELOVL3Q9HB03 270 aa4.04□□□□□ -1.76
USP40-213ENST00000483216 SPANXA1Q9NS26 97 aa4.04□□□□□ -1.76
USP40-213ENST00000483216 NECAP2Q9NVZ3 263 aa4.04□□□□□ -1.76
USP40-213ENST00000483216 ZNF586Q9NXT0 402 aa4.04□□□□□ -1.76
USP40-213ENST00000483216 UQCR10Q9UDW1 63 aa4.04□□□□□ -1.76
USP40-213ENST00000483216 MRM2Q9UI43 246 aaKnown RBP4.04□□□□□ -1.76
USP40-213ENST00000483216 ZNF230Q9UIE0 474 aaPredicted RBP4.04□□□□□ -1.76
USP40-213ENST00000483216 AK3Q9UIJ7 227 aa4.04□□□□□ -1.76
USP40-213ENST00000483216 NAGKQ9UJ70 344 aa4.04□□□□□ -1.76
USP40-213ENST00000483216 CES1P1Q9UKY3 287 aa4.04□□□□□ -1.76
USP40-213ENST00000483216 LAMA2P24043 3122 aaKnown RBP4.03□□□□□ -1.76
USP40-213ENST00000483216 PIKFYVEQ9Y2I7 2098 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 TGIF2-C20orf24A0A0A6YYL0 155 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 TRBV11-1A0A0K0K1C0 115 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 WI2-2373I1.2A0A1W2PRP0 233 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 F6UZH7 168 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 J3QR89 54 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 PDE6DO43924 150 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 TNFSF15O95150 251 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 GPR75O95800 540 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 EPPINO95925 133 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 HRASP01112 189 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 REG1AP05451 166 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 SERPINA7P05543 415 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 HPNP05981 417 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 SRP19P09132 144 aaKnown RBP4.03□□□□□ -1.76
USP40-213ENST00000483216 SCGB1A1P11684 91 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 HIST1H1DP16402 221 aaKnown RBP4.03□□□□□ -1.76
USP40-213ENST00000483216 ZNF43P17038 809 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 SERPINA2P20848 420 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 CSRP1P21291 193 aaKnown RBP4.03□□□□□ -1.76
USP40-213ENST00000483216 ZNF93P35789 620 aaPredicted RBP4.03□□□□□ -1.76
USP40-213ENST00000483216 GABRA2P47869 451 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 GNG10P50151 68 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 EFNA3P52797 238 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 RAB38P57729 211 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 DEFB103AP81534 67 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 FUT5Q11128 374 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 MORN2Q502X0 79 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 C9orf135Q5VTT2 229 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 CYP2G1PQ6ZSU1 146 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 LHFPL1Q86WI0 220 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 C20orf196Q8IYI0 205 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 NOXO1Q8NFA2 376 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 OR4C5Q8NGB2 326 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 OR13C9Q8NGT0 318 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 OR9A2Q8NGT5 310 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 OR2T10Q8NGZ9 312 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 PFN4Q8NHR9 129 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 MARCH1Q8TCQ1 289 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 Q8WTZ3 238 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 ZNF681Q96N22 645 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 LINC00167Q96N53 147 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 TP53RKQ96S44 253 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 NMNAT3Q96T66 252 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 RNF2Q99496 336 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 TMEM59Q9BXS4 323 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 TMEM9BQ9NQ34 198 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 SLC35D1Q9NTN3 355 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 SLC23A2Q9UGH3 650 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 ZNF391Q9UJN7 358 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 MMACHCQ9Y4U1 282 aa4.03□□□□□ -1.76
USP40-213ENST00000483216 DENND4AQ7Z401 1863 aa4.03□□□□□ -1.77
USP40-213ENST00000483216 ALPK3Q96L96 1907 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 PLXNB3Q9ULL4 1909 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 TRAV36DV7A0A075B6V5 113 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 A0A1W2PPE3 182 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 OR6C6A6NF89 314 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 ZNF860A6NHJ4 632 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 CRYM-AS1A6NIL9 109 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 ZNF727A8MUV8 499 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 ZNF705FA8MVS1 300 aaPredicted RBP4.02□□□□□ -1.77
USP40-213ENST00000483216 HIDE1A8MVS5 230 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 ZNF878C9JN71 531 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 K7N7A8 449 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 HSD17B6O14756 317 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 TRAF3IP2O43734 574 aaPredicted RBP4.02□□□□□ -1.77
USP40-213ENST00000483216 FCMRO60667 390 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 DIRAS3O95661 229 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 MT-CO2P00403 227 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 HPRT1P00492 218 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 CSTAP01040 98 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 NRASP01111 189 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 KRASP01116 189 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 SOD3P08294 240 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 H2BFMP0C1H6 154 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 ZNF705DP0CH99 300 aaPredicted RBP4.02□□□□□ -1.77
USP40-213ENST00000483216 ZNF705BP0CI00 300 aaPredicted RBP4.02□□□□□ -1.77
USP40-213ENST00000483216 RD3LP0DJH9 198 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 BCL2P10415 239 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 ESDP10768 282 aa4.02□□□□□ -1.77
USP40-213ENST00000483216 ZNF708P17019 499 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms