RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 LHFPL1Q86WI0 220 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 OR1B1Q8NGR6 318 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 HIST1H2BAQ96A08 127 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 CYYR1Q96J86 154 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 TMEM140Q9NV12 185 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 IL19Q9UHD0 177 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 BPIFB3P59826 476 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 TMEM171Q8WVE6 324 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 METRNQ9UJH8 293 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 LOC102724200A0A096LPH7 203 aaPredicted RBP9.41□□□□□ -0.9
PTPRF-204ENST00000412568 LINC00587B1AMM8 73 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 MPZP25189 248 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 Q6ZN92 141 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 C1orf174Q8IYL3 243 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 VAX2Q9UIW0 290 aa9.41□□□□□ -0.9
PTPRF-204ENST00000412568 ZNF253O75346 499 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 FBP1P09467 338 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 LINC00205P59089 165 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 PSG5Q15238 335 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 TBR1Q16650 682 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 RNASEKQ6P5S7 137 aaKnown RBP9.4□□□□□ -0.9
PTPRF-204ENST00000412568 DOLPP1Q86YN1 238 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 C1orf162Q8NEQ5 155 aaPredicted RBP9.4□□□□□ -0.9
PTPRF-204ENST00000412568 VSTM2AQ8TAG5 236 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 FAM216AQ8WUB2 273 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 TMEM106BQ9NUM4 274 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 A0A1W2PN81 502 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 ANOS1P23352 680 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 CD1BP29016 333 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 CEACAM3P40198 252 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 KIR2DS2P43631 304 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 CAMPP49913 170 aa9.4□□□□□ -0.9
PTPRF-204ENST00000412568 SRSF3P84103 164 aaKnown RBP9.4□□□□□ -0.9
PTPRF-204ENST00000412568 DBX1A6NMT0 343 aa9.4□□□□□ -0.91
PTPRF-204ENST00000412568 ETV2O00321 342 aaPredicted RBP9.4□□□□□ -0.91
PTPRF-204ENST00000412568 TDGF1P13385 188 aa9.4□□□□□ -0.91
PTPRF-204ENST00000412568 TNFRSF9Q07011 255 aa9.4□□□□□ -0.91
PTPRF-204ENST00000412568 SLC35E4Q6ICL7 350 aa9.4□□□□□ -0.91
PTPRF-204ENST00000412568 DTX1Q86Y01 620 aa9.4□□□□□ -0.91
PTPRF-204ENST00000412568 IDI2-AS1Q9NZ38 188 aa9.4□□□□□ -0.91
PTPRF-204ENST00000412568 PPIAL4CA0A0B4J2A2 164 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 IGHV3-35A0A0C4DH35 117 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 SERTM2A0A1B0GWG4 89 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 J3QW42 95 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 DNASE2O00115 360 aaPredicted RBP9.39□□□□□ -0.91
PTPRF-204ENST00000412568 PPIAL4GP0DN37 164 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 UCP1P25874 307 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 CDKN1AP38936 164 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 RND3P61587 244 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 ZNF474Q6S9Z5 364 aaPredicted RBP9.39□□□□□ -0.91
PTPRF-204ENST00000412568 GTF2H5Q6ZYL4 71 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 OR1L8Q8NGR8 309 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 SH2D2AQ9NP31 389 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 TUBD1Q9UJT1 453 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 CDH23Q9H251 3354 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 K7EM74 188 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 WISP2O76076 250 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 LY6HO94772 140 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 HSPB1P04792 205 aaKnown RBP9.39□□□□□ -0.91
PTPRF-204ENST00000412568 RHOBP62745 196 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 COTL1Q14019 142 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 S100A7AQ86SG5 101 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 GLRX5Q86SX6 157 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 TCTEX1D1Q8N7M0 179 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 RNF166Q96A37 237 aaPredicted RBP9.39□□□□□ -0.91
PTPRF-204ENST00000412568 NOL4LQ96MY1 436 aaPredicted RBP9.39□□□□□ -0.91
PTPRF-204ENST00000412568 GINS3Q9BRX5 216 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 SEBOXQ9HB31 216 aaPredicted RBP9.39□□□□□ -0.91
PTPRF-204ENST00000412568 PLSCR2Q9NRY7 297 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 PRNDQ9UKY0 176 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 ZNF106Q9H2Y7 1883 aaKnown RBP9.39□□□□□ -0.91
PTPRF-204ENST00000412568 CHD9Q3L8U1 2897 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 A0A1B0GV90 55 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 C11orf94C9JXX5 98 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 UBE2L3P68036 154 aaKnown RBP9.39□□□□□ -0.91
PTPRF-204ENST00000412568 KHDC3LQ587J8 217 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 MIC13Q5XKP0 118 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 SLC35E3Q7Z769 313 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 OR10G8Q8NGN5 311 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 VN1R17PQ8TDU5 208 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 TBX15Q96SF7 602 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 PLSCR4Q9NRQ2 329 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 CRIM1Q9NZV1 1036 aa9.39□□□□□ -0.91
PTPRF-204ENST00000412568 CXorf65A6NEN9 183 aa9.38□□□□□ -0.91
PTPRF-204ENST00000412568 C17orf100A8MU93 164 aa9.38□□□□□ -0.91
PTPRF-204ENST00000412568 B4DEV8 164 aa9.38□□□□□ -0.91
PTPRF-204ENST00000412568 RAMP3O60896 148 aa9.38□□□□□ -0.91
PTPRF-204ENST00000412568 DDTP30046 118 aa9.38□□□□□ -0.91
PTPRF-204ENST00000412568 WDR25Q64LD2 544 aaPredicted RBP9.38□□□□□ -0.91
PTPRF-204ENST00000412568 C11orf42Q8N5U0 333 aa9.38□□□□□ -0.91
PTPRF-204ENST00000412568 QTRT1Q9BXR0 403 aaKnown RBP9.38□□□□□ -0.91
PTPRF-204ENST00000412568 CT45A10P0DMU9 189 aa9.38□□□□□ -0.91
PTPRF-204ENST00000412568 USF1P22415 310 aaPredicted RBP9.38□□□□□ -0.91
PTPRF-204ENST00000412568 APOBEC3AP31941 199 aaPredicted RBP9.38□□□□□ -0.91
PTPRF-204ENST00000412568 SERF2P84101 59 aa9.38□□□□□ -0.91
PTPRF-204ENST00000412568 ECSCRQ19T08 205 aa9.38□□□□□ -0.91
PTPRF-204ENST00000412568 Q6ZS92 163 aa9.38□□□□□ -0.91
PTPRF-204ENST00000412568 H1FOOQ8IZA3 346 aaPredicted RBP9.38□□□□□ -0.91
PTPRF-204ENST00000412568 PRSS33Q8NF86 280 aa9.38□□□□□ -0.91
PTPRF-204ENST00000412568 TAF15Q92804 592 aaKnown RBP eCLIP9.38□□□□□ -0.916e-7■■□□□ 11.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms