RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 LIAT1Q6ZQX7 453 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 SLC6A13Q9NSD5 602 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 LAMTOR2Q9Y2Q5 125 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 NUP205Q92621 2012 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 LYNX1G3V0Z9 82 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 H3BUT2 72 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 RAMP1O60894 148 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 TRGV3P03979 118 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 SEC11BP0C7V7 166 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 LYNX1P0DP58 116 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 PMVKQ15126 192 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 POU2AF1Q16633 256 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 OR9G1Q8NH87 305 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 MRPL30Q8TCC3 161 aaKnown RBP6.22□□□□□ -1.41
SCN9A-202ENST00000409435 LSM10Q969L4 123 aaKnown RBP6.22□□□□□ -1.41
SCN9A-202ENST00000409435 PLAC1Q9HBJ0 212 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 DEPPQ9NTK1 212 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 TRBV9A0A0B4J1U6 114 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 SLC17A2O00624 439 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 GHRHP01286 108 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 COX5BP10606 129 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 GATA4P43694 442 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 CDK5R1Q15078 307 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 SRSF7Q16629 238 aaKnown RBP eCLIP6.22□□□□□ -1.41
SCN9A-202ENST00000409435 FNDC7Q5VTL7 733 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 RNF165Q6ZSG1 346 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 TCF23Q7RTU1 214 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 OR2K2Q8NGT1 345 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 PTX4Q96A99 478 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 MARS2Q96GW9 593 aaKnown RBP6.22□□□□□ -1.41
SCN9A-202ENST00000409435 C1orf43Q9BWL3 253 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 DPRXA6NFQ7 191 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 J3QW42 95 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 HARBI1Q96MB7 349 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 DPM3Q9P2X0 92 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 LOC389332A0A1B0GUA5 103 aa6.21□□□□□ -1.41
SCN9A-202ENST00000409435 CHST1O43916 411 aa6.21□□□□□ -1.41
SCN9A-202ENST00000409435 BGLAPP02818 100 aa6.21□□□□□ -1.41
SCN9A-202ENST00000409435 AMY1AP04745 511 aa6.21□□□□□ -1.41
SCN9A-202ENST00000409435 MGPP08493 103 aa6.21□□□□□ -1.41
SCN9A-202ENST00000409435 WNT2P09544 360 aa6.21□□□□□ -1.41
SCN9A-202ENST00000409435 MFAP2P55001 183 aa6.21□□□□□ -1.41
SCN9A-202ENST00000409435 PRSS12P56730 875 aa6.21□□□□□ -1.41
SCN9A-202ENST00000409435 LGALSLQ3ZCW2 172 aaPredicted RBP6.21□□□□□ -1.41
SCN9A-202ENST00000409435 MRPL18Q9H0U6 180 aaKnown RBP6.21□□□□□ -1.41
SCN9A-202ENST00000409435 MAP1LC3AQ9H492 121 aa6.21□□□□□ -1.41
SCN9A-202ENST00000409435 SEMA5BQ9P283 1151 aa6.21□□□□□ -1.41
SCN9A-202ENST00000409435 COL6A6A6NMZ7 2263 aa6.21□□□□□ -1.41
SCN9A-202ENST00000409435 NCOR1O75376 2440 aa6.21□□□□□ -1.41
SCN9A-202ENST00000409435 OR11H12B2RN74 326 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 F12P00748 615 aaPredicted RBP6.21□□□□□ -1.42
SCN9A-202ENST00000409435 ZNF137PP52743 207 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 CACNG7P62955 275 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 TMEM179BQ7Z7N9 219 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 OR11H1Q8NG94 326 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 OR11H2Q8NH07 326 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 FNDC1Q4ZHG4 1894 aaPredicted RBP6.21□□□□□ -1.42
SCN9A-202ENST00000409435 TANC1Q9C0D5 1861 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 hCG_38984A0A1B0GV85 526 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 A0A1W2PP11 408 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 ZAR1LA6NP61 321 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 DLEU1O43261 78 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 GCM2O75603 506 aaPredicted RBP6.21□□□□□ -1.42
SCN9A-202ENST00000409435 HPRT1P00492 218 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 DYNLT3P51808 116 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 C9orf153Q5TBE3 101 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 DLEU7Q6UYE1 221 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 SELENOHQ8IZQ5 122 aaKnown RBP6.21□□□□□ -1.42
SCN9A-202ENST00000409435 FGF20Q9NP95 211 aaPredicted RBP6.21□□□□□ -1.42
SCN9A-202ENST00000409435 IGHV3-72A0A0B4J1Y9 119 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 TRAV21A0A0B4J279 112 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 PINLYPA6NC86 204 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 MARCH11A6NNE9 402 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 IGF2P01344 180 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 IGHG3P01860 377 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 FAM157CP0CG43 387 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 PMELP40967 661 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 EEF1AKMT3Q96AZ1 226 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 RNF122Q9H9V4 155 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 MTFP1Q9UDX5 166 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 MIA3Q5JRA6 1907 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 TICRRQ7Z2Z1 1910 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 TMEM50AO95807 157 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 CXorf1O96002 111 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 SCAND1P57086 179 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 IGLV3-21P80748 117 aaPredicted RBP6.21□□□□□ -1.42
SCN9A-202ENST00000409435 CD300CQ08708 224 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 NFAM1Q8NET5 270 aaPredicted RBP6.21□□□□□ -1.42
SCN9A-202ENST00000409435 IDI2-AS1Q9NZ38 188 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 OR51B2Q9Y5P1 312 aa6.21□□□□□ -1.42
SCN9A-202ENST00000409435 A8MWL6 223 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 A8MWV9 139 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 PAGE4O60829 102 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 NDUFC2O95298 119 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 ESDP10768 282 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 MDKP21741 143 aaPredicted RBP6.2□□□□□ -1.42
SCN9A-202ENST00000409435 LMO1P25800 156 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 OTX1P32242 354 aaPredicted RBP6.2□□□□□ -1.42
SCN9A-202ENST00000409435 RFLNBQ8N5W9 214 aa6.2□□□□□ -1.42
SCN9A-202ENST00000409435 RNF166Q96A37 237 aaPredicted RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms