RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 OR10J4P0C629 311 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 SELLP14151 372 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 RAB4AP20338 218 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 GCH1P30793 250 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 ADMP35318 185 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 RPS16P62249 146 aaKnown RBP8.28□□□□□ -1.08
COL17A1-203ENST00000393211 Q0VG73 95 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 ZNF124Q15973 351 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 SPINK9Q5DT21 86 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 GCSAMLQ5JQS6 135 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 TEPPQ6URK8 271 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 TGIF2LXQ8IUE1 241 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 CD177Q8N6Q3 437 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 FAM169BQ8N8A8 192 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 ZNF114Q8NC26 417 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 OR4S2Q8NH73 311 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 C20orf144Q9BQM9 153 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 DERL1Q9BUN8 251 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 PATZ1Q9HBE1 687 aaKnown RBP8.28□□□□□ -1.08
COL17A1-203ENST00000393211 TMEM106BQ9NUM4 274 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 GNG12Q9UBI6 72 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 TCF19Q9Y242 345 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 POLR3KQ9Y2Y1 108 aaPredicted RBP8.28□□□□□ -1.08
COL17A1-203ENST00000393211 R4GN57 208 aa8.28□□□□□ -1.08
COL17A1-203ENST00000393211 IGHV3-43A0A0B4J1X8 118 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 SCO2A0A1W2PP80 73 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 SRRM5B3KS81 715 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 M0R1X1 148 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 LYZL6O75951 148 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 IGLV1-44P01699 117 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 MT-ND6P03923 174 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 IL6RP08887 468 aaPredicted RBP8.27□□□□□ -1.09
COL17A1-203ENST00000393211 SNRPCP09234 159 aaKnown RBP8.27□□□□□ -1.09
COL17A1-203ENST00000393211 IGHV3-43DP0DP04 118 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 EGR1P18146 543 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 PLA2G5P39877 138 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 TNFSF10P50591 281 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 ZNF90Q03938 601 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 EFNB3Q15768 340 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 RTL8BQ17RB0 113 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 MIC13Q5XKP0 118 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 FAM53AQ6NSI3 398 aaPredicted RBP8.27□□□□□ -1.09
COL17A1-203ENST00000393211 VASH2Q86V25 355 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 CXorf67Q86X51 503 aaPredicted RBP8.27□□□□□ -1.09
COL17A1-203ENST00000393211 TMEM256Q8N2U0 113 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 RFESDQ8TAC1 157 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 LRRC29Q8WV35 223 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 DDB2Q92466 427 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 ADTRPQ96IZ2 230 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 C19orf24Q9BVV8 132 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 GNB1LQ9BYB4 327 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 TMEM167BQ9NRX6 74 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 TMEM140Q9NV12 185 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 METRNQ9UJH8 293 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 FOXA2Q9Y261 457 aaPredicted RBP8.27□□□□□ -1.09
COL17A1-203ENST00000393211 GTF3C1Q12789 2109 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 PRUNE2Q8WUY3 3088 aa8.27□□□□□ -1.09
COL17A1-203ENST00000393211 IGHV3-64DA0A0J9YX35 117 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 A0A1W2PNU3 283 aaPredicted RBP8.26□□□□□ -1.09
COL17A1-203ENST00000393211 C15orf61A6NNL5 157 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 DEFB108AA8MXU0 73 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 TNFSF13O75888 250 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 DEFA4P12838 97 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 CRISP2P16562 243 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 LGALS4P56470 323 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 LOXL3P58215 753 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 HSPE1P61604 102 aaKnown RBP8.26□□□□□ -1.09
COL17A1-203ENST00000393211 RPL31P62899 125 aaKnown RBP8.26□□□□□ -1.09
COL17A1-203ENST00000393211 ARG2P78540 354 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 POU2AF1Q16633 256 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 PRSS8Q16651 343 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 RPEL1Q2QD12 228 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 RNFT1Q5M7Z0 435 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 WDR73Q6P4I2 378 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 TEX43Q6ZNM6 134 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 GCNT2Q8N0V5 402 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 PNKDQ8N490 385 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 GCSAMQ8N6F7 178 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 CDX2Q99626 313 aaPredicted RBP8.26□□□□□ -1.09
COL17A1-203ENST00000393211 SNHG12Q9BXW3 62 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 ENY2Q9NPA8 101 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 TMEM14BQ9NUH8 114 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 YTHDF2Q9Y5A9 579 aaKnown RBP8.26□□□□□ -1.09
COL17A1-203ENST00000393211 USP34Q70CQ2 3546 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 USF3Q68DE3 2245 aa8.26□□□□□ -1.09
COL17A1-203ENST00000393211 EREGO14944 169 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 NPY1RP25929 384 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 THBS3P49746 956 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 PRR20EP86478 221 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 PRR20CP86479 221 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 PRR20DP86480 221 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 PRR20BP86481 221 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 PRR20AP86496 221 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 TMEM30BQ3MIR4 351 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 STPG3Q8N7X2 389 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 SLC24A4Q8NFF2 622 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 Q8TCH9 128 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 NEUROG1Q92886 237 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 C1orf159Q96HA4 380 aa8.25□□□□□ -1.09
COL17A1-203ENST00000393211 EAF1Q96JC9 268 aaPredicted RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms