RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 DEFA4P12838 97 aa18.23■□□□□ 0.51
UPF3A-201ENST00000351487 THBS3P49746 956 aa18.23■□□□□ 0.51
UPF3A-201ENST00000351487 KRTCAP3Q53RY4 240 aa18.23■□□□□ 0.51
UPF3A-201ENST00000351487 ZNF439Q8NDP4 499 aa18.23■□□□□ 0.51
UPF3A-201ENST00000351487 TMEM170AQ8WVE7 144 aa18.23■□□□□ 0.51
UPF3A-201ENST00000351487 NEIL1Q96FI4 390 aaPredicted RBP18.23■□□□□ 0.51
UPF3A-201ENST00000351487 GAFA1Q96PS6 74 aa18.23■□□□□ 0.51
UPF3A-201ENST00000351487 LINC00574Q9H8X3 128 aa18.23■□□□□ 0.51
UPF3A-201ENST00000351487 PLCE1Q9P212 2302 aa18.23■□□□□ 0.51
UPF3A-201ENST00000351487 CD40P25942 277 aa18.23■□□□□ 0.51
UPF3A-201ENST00000351487 LEAP2Q969E1 77 aa18.23■□□□□ 0.51
UPF3A-201ENST00000351487 ASPMQ8IZT6 3477 aa18.23■□□□□ 0.51
UPF3A-201ENST00000351487 K7EM74 188 aa18.22■□□□□ 0.51
UPF3A-201ENST00000351487 PHOX2AO14813 284 aa18.22■□□□□ 0.51
UPF3A-201ENST00000351487 FAM27E3Q08E93 113 aa18.22■□□□□ 0.51
UPF3A-201ENST00000351487 DUX4L9Q6RFH8 374 aaPredicted RBP18.22■□□□□ 0.51
UPF3A-201ENST00000351487 C22orf34Q6ZV56 151 aa18.22■□□□□ 0.51
UPF3A-201ENST00000351487 C16orf82Q7Z2V1 217 aa18.22■□□□□ 0.51
UPF3A-201ENST00000351487 ADTRPQ96IZ2 230 aa18.22■□□□□ 0.51
UPF3A-201ENST00000351487 PYGO2Q9BRQ0 406 aa18.22■□□□□ 0.51
UPF3A-201ENST00000351487 CUL9Q8IWT3 2517 aa18.22■□□□□ 0.51
UPF3A-201ENST00000351487 TMEM30BQ3MIR4 351 aa18.22■□□□□ 0.51
UPF3A-201ENST00000351487 SPNS3Q6ZMD2 512 aa18.22■□□□□ 0.51
UPF3A-201ENST00000351487 NUP37Q8NFH4 326 aa18.22■□□□□ 0.51
UPF3A-201ENST00000351487 FOXA2Q9Y261 457 aaPredicted RBP18.22■□□□□ 0.51
UPF3A-201ENST00000351487 VENTXO95231 258 aa18.21■□□□□ 0.51
UPF3A-201ENST00000351487 PFN1P07737 140 aaKnown RBP18.21■□□□□ 0.51
UPF3A-201ENST00000351487 TNFSF4P23510 183 aa18.21■□□□□ 0.51
UPF3A-201ENST00000351487 GCSAMLQ5JQS6 135 aa18.21■□□□□ 0.51
UPF3A-201ENST00000351487 ZNF788Q6ZQV5 615 aa18.21■□□□□ 0.51
UPF3A-201ENST00000351487 ABHD5Q8WTS1 349 aa18.21■□□□□ 0.51
UPF3A-201ENST00000351487 RHOVQ96L33 236 aa18.21■□□□□ 0.51
UPF3A-201ENST00000351487 GGTLC1Q9BX51 225 aa18.21■□□□□ 0.51
UPF3A-201ENST00000351487 MS4A5Q9H3V2 200 aa18.21■□□□□ 0.51
UPF3A-201ENST00000351487 TMEM14BQ9NUH8 114 aa18.21■□□□□ 0.51
UPF3A-201ENST00000351487 DMXL1Q9Y485 3027 aa18.21■□□□□ 0.51
UPF3A-201ENST00000351487 ZNF729A6NN14 1252 aaPredicted RBP18.21■□□□□ 0.5
UPF3A-201ENST00000351487 C11orf94C9JXX5 98 aa18.21■□□□□ 0.5
UPF3A-201ENST00000351487 CCKARP32238 428 aa18.21■□□□□ 0.5
UPF3A-201ENST00000351487 POU2AF1Q16633 256 aa18.21■□□□□ 0.5
UPF3A-201ENST00000351487 FRZBQ92765 325 aa18.21■□□□□ 0.5
UPF3A-201ENST00000351487 MGST2Q99735 147 aa18.21■□□□□ 0.5
UPF3A-201ENST00000351487 DYSFO75923 2080 aa18.2■□□□□ 0.5
UPF3A-201ENST00000351487 TRAV38-1A0A0B4J264 116 aa18.2■□□□□ 0.5
UPF3A-201ENST00000351487 TM4SF5O14894 197 aa18.2■□□□□ 0.5
UPF3A-201ENST00000351487 TRGC1P0CF51 173 aa18.2■□□□□ 0.5
UPF3A-201ENST00000351487 OR4A47Q6IF82 309 aa18.2■□□□□ 0.5
UPF3A-201ENST00000351487 ABHD12Q8N2K0 398 aa18.2■□□□□ 0.5
UPF3A-201ENST00000351487 ZNF383Q8NA42 475 aa18.2■□□□□ 0.5
UPF3A-201ENST00000351487 CORO2AQ92828 525 aa18.2■□□□□ 0.5
UPF3A-201ENST00000351487 OR51M1Q9H341 326 aa18.2■□□□□ 0.5
UPF3A-201ENST00000351487 GSN-AS1Q9NRJ2 163 aa18.2■□□□□ 0.5
UPF3A-201ENST00000351487 IDI2-AS1Q9NZ38 188 aa18.2■□□□□ 0.5
UPF3A-201ENST00000351487 ELOA3CA0A087WX78 387 aaPredicted RBP18.19■□□□□ 0.5
UPF3A-201ENST00000351487 FABP1P07148 127 aa18.19■□□□□ 0.5
UPF3A-201ENST00000351487 MRPS11P82912 194 aaKnown RBP18.19■□□□□ 0.5
UPF3A-201ENST00000351487 TEX36Q5VZQ5 186 aa18.19■□□□□ 0.5
UPF3A-201ENST00000351487 LSM4Q9Y4Z0 139 aaKnown RBP18.19■□□□□ 0.5
UPF3A-201ENST00000351487 A0A1W2PPV4 95 aa18.19■□□□□ 0.5
UPF3A-201ENST00000351487 PDE6DO43924 150 aa18.19■□□□□ 0.5
UPF3A-201ENST00000351487 OR51G1Q8NGK1 321 aa18.19■□□□□ 0.5
UPF3A-201ENST00000351487 KCNIP2Q9NS61 270 aa18.19■□□□□ 0.5
UPF3A-201ENST00000351487 GAR1Q9NY12 217 aaKnown RBP18.19■□□□□ 0.5
UPF3A-201ENST00000351487 H7BYZ3 331 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 BMP5P22003 454 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 HSPE1P61604 102 aaKnown RBP18.18■□□□□ 0.5
UPF3A-201ENST00000351487 TCF15Q12870 199 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 LYG1Q8N1E2 194 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 OR10A7Q8NGE5 316 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 ANAPC16Q96DE5 110 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 SRD5A3Q9H8P0 318 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 PXMP4Q9Y6I8 212 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 KLK10O43240 276 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 GYPAP02724 150 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 NPPCP23582 126 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 TGIF2LYQ8IUE0 185 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 SLC24A4Q8NFF2 622 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 CCL13Q99616 98 aa18.18■□□□□ 0.5
UPF3A-201ENST00000351487 ICE1Q9Y2F5 2266 aa18.17■□□□□ 0.5
UPF3A-201ENST00000351487 PPP1R2P9O14990 202 aa18.17■□□□□ 0.5
UPF3A-201ENST00000351487 FAM216BQ8N7L0 139 aa18.17■□□□□ 0.5
UPF3A-201ENST00000351487 DEFB108BQ8NET1 73 aa18.17■□□□□ 0.5
UPF3A-201ENST00000351487 C1orf159Q96HA4 380 aa18.17■□□□□ 0.5
UPF3A-201ENST00000351487 NPVFQ9HCQ7 196 aa18.17■□□□□ 0.5
UPF3A-201ENST00000351487 NPY1RP25929 384 aa18.17■□□□□ 0.5
UPF3A-201ENST00000351487 S100A2P29034 98 aa18.17■□□□□ 0.5
UPF3A-201ENST00000351487 GALR1P47211 349 aa18.17■□□□□ 0.5
UPF3A-201ENST00000351487 HIST3H2BBQ8N257 126 aa18.17■□□□□ 0.5
UPF3A-201ENST00000351487 PATZ1Q9HBE1 687 aaKnown RBP18.17■□□□□ 0.5
UPF3A-201ENST00000351487 RPUSD1Q9UJJ7 312 aaKnown RBP18.17■□□□□ 0.5
UPF3A-201ENST00000351487 HRASP01112 189 aa18.16■□□□□ 0.5
UPF3A-201ENST00000351487 STAG3L2P0CL84 134 aa18.16■□□□□ 0.5
UPF3A-201ENST00000351487 STAG3L3P0CL85 134 aa18.16■□□□□ 0.5
UPF3A-201ENST00000351487 IRF2P14316 349 aa18.16■□□□□ 0.5
UPF3A-201ENST00000351487 S100PP25815 95 aa18.16■□□□□ 0.5
UPF3A-201ENST00000351487 MIC13Q5XKP0 118 aa18.16■□□□□ 0.5
UPF3A-201ENST00000351487 SLC25A48Q6ZT89 311 aaKnown RBP18.16■□□□□ 0.5
UPF3A-201ENST00000351487 ZCCHC14Q8WYQ9 949 aaKnown RBP18.16■□□□□ 0.5
UPF3A-201ENST00000351487 OR5B12Q96R08 314 aa18.16■□□□□ 0.5
UPF3A-201ENST00000351487 TXNDC17Q9BRA2 123 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms